Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq463 86.0 9e-12 >seq463 Length=83378 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/213 (69%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| | | || | ||||| || || || || Sbjct 56655 GCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAG 56596 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| ||||||||||| |||||||| || |||| || || | || ||||| Sbjct 56595 ACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAA 56536 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA-----ACTTGT-ATCATT 39789 ||| || || || || || || ||||| || | || || | |||| | ||| | Sbjct 56535 GATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAGGACTTCTCATCGCT 56476 Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTT 39822 | ||||||||| | ||||| || || ||||| Sbjct 56475 A---ATCCACTTCAGGGCCCAGTCGGCCTTCTT 56446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904712892640