Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq188 215 6e-51
seq463 105 8e-18
>seq188
Length=580545
Score = 215 bits (238), Expect = 6e-51
Identities = 987/1535 (64%), Gaps = 49/1535 (3%)
Strand=Plus/Minus
Query 110575 GATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAG 110634
||| |||||||||||||| | | | ||| | | |||||| | | |||||| ||
Sbjct 492988 GATGTTCTGGATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAG 492929
Query 110635 ACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAG 110694
||| || | ||| || || | ||| |||||||| |||||||| || ||
Sbjct 492928 ACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAG 492869
Query 110695 GGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGAT 110754
| | | |||||||||| | ||||| || |||||||| || || || ||||||||
Sbjct 492868 AACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGAT 492809
Query 110755 TTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTC 110814
|| | |||| ||| || ||||| || || | | |||| ||| || | ||| | ||
Sbjct 492808 CTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTG 492749
Query 110815 CTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCAC 110872
||| || | ||||| | | |||||||||| || || | || || || || ||||
Sbjct 492748 CTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAG-AGATCCGAGGGCTTGACATT-CCAC 492691
Query 110873 ATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCT 110932
|||||| |||| || | || || || | || |||||||| | || | |||| ||
Sbjct 492690 ATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCC 492631
Query 110933 TGGGCTTCAGCCA-ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGAT 110991
| | | |||| | ||| | | |||| ||||| || ||||| || |||||
Sbjct 492630 TCCTCCTTGGCCAGCTGCACCG-ACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGAT 492572
Query 110992 ACGAGCATTCATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAAAATAAATA 111050
|| | || || || || || || || || ||| | ||
Sbjct 492571 CTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATA-CGGAGAGCCAGGAAGG 492513
Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110
|||| || ||||| || ||||| | ||| || || | ||| ||||| || || || |
Sbjct 492512 CATCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAG 492453
Query 111111 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 111170
| || ||| || || || ||| |||| || ||| || || | ||| | ||
Sbjct 492452 CCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCT 492393
Query 111171 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG------ACAT 111224
|||| || || || || | | || || || || | || ||| |||
Sbjct 492392 GGGTGACCTCGTGGAGCTTCTGGAAGTC----GT-AGACTC-CCTCGTTGTAGTCAACAA 492339
Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284
| | || ||||||| || |||| ||||| ||||| |||||| | |||||
Sbjct 492338 AGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACT 492279
Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 111344
| | ||| || || || | |||||| || || || || | ||||| ||||| ||||
Sbjct 492278 CGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCT 492219
Query 111345 TCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404
| |||| |||||||||||||||||| |||| | || ||||| ||||| | | ||
Sbjct 492218 TGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGA 492159
Query 111405 GAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCC 111460
| || || | ||| | | || | | || |||| ||| | || | ||| | |
Sbjct 492158 GGATGGCATACCAGAGCTTCTGAGCCT----TCATGGTCTTGCGACCCTTGCCCATCTGC 492103
Query 111461 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCC 111520
|||||||| ||| | ||| ||||||||||| || ||||| || || || ||
Sbjct 492102 TCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGG-GCA 492044
Query 111521 TT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC 111579
|| || || || | |||| ||| | ||| | ||| |||| ||||||||| |||||
Sbjct 492043 TTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTC 491984
Query 111580 TGGAATCCACAGG--GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTG 111637
|||||||| ||| || |||| || || | ||| |||| || | || |||||
Sbjct 491983 GGGAATCCAGAGGGCGAGGAAA--AGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTC 491926
Query 111638 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 111697
|| || || | ||| || | || ||| |||||||| |||||||| || | |||| |
Sbjct 491925 TTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAA 491866
Query 111698 GATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCG 111753
| || | | | | ||| | || | || ||||| || ||| ||| || || ||
Sbjct 491865 GCACCGGGGCGCTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACG 491807
Query 111754 AAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGC 111813
||||| || | | ||| | || ||| || || || |||| || ||||
Sbjct 491806 GAGCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGC 491747
Query 111814 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACAC 111871
| | |||| || | ||||| || || ||| ||| ||||| | ||||| |
Sbjct 491746 GCGGATGCGGTGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AG 491688
Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931
| | | || || |||||||||| | || ||||||||||| || ||| |||||||||
Sbjct 491687 T-CTTGAGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAA 491629
Query 111932 CTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990
||||| ||| || || || ||||| || |||||||| || || | |||||| |||
Sbjct 491628 GAGGACAGCTG-GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGA- 491571
Query 111991 CATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048
| | |||| |||||| || ||| || || | ||| |||| ||| || || |
Sbjct 491570 -AGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAG 491512
Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083
|| || | ||||| ||||||| ||||| ||| ||
Sbjct 491511 ATACCAACGGCGACACGCATGATCATGTGCTGGGG 491477
>seq463
Length=83378
Score = 105 bits (116), Expect = 8e-18
Identities = 143/198 (72%), Gaps = 6/198 (3%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||| ||||||||||| || || || || || || |||||| ||||| ||||| |||||
Sbjct 56640 GTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACC 56581
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||| | ||| | || | | ||| | ||| ||||||||||||||| ||
Sbjct 56580 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGC 56521
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCAT 122846
|| || |||| || || | |||||||||| ||||| |||| || ||| ||||
Sbjct 56520 GGCGAAGGCAACGAGACGCTGGGCGAAGGAG---GACTTCTCATCGCTAATCCACTTCAG 56464
Query 122847 TGCCCATTTCGCCTTCTT 122864
||||| | ||||||||
Sbjct 56463 GGCCCAGTCGGCCTTCTT 56446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628028263209600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |