Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq188 215 6e-51 seq463 105 8e-18 >seq188 Length=580545 Score = 215 bits (238), Expect = 6e-51 Identities = 987/1535 (64%), Gaps = 49/1535 (3%) Strand=Plus/Minus Query 110575 GATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAG 110634 ||| |||||||||||||| | | | ||| | | |||||| | | |||||| || Sbjct 492988 GATGTTCTGGATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAG 492929 Query 110635 ACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAG 110694 ||| || | ||| || || | ||| |||||||| |||||||| || || Sbjct 492928 ACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAG 492869 Query 110695 GGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGAT 110754 | | | |||||||||| | ||||| || |||||||| || || || |||||||| Sbjct 492868 AACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGAT 492809 Query 110755 TTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTC 110814 || | |||| ||| || ||||| || || | | |||| ||| || | ||| | || Sbjct 492808 CTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTG 492749 Query 110815 CTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCAC 110872 ||| || | ||||| | | |||||||||| || || | || || || || |||| Sbjct 492748 CTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAG-AGATCCGAGGGCTTGACATT-CCAC 492691 Query 110873 ATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCT 110932 |||||| |||| || | || || || | || |||||||| | || | |||| || Sbjct 492690 ATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCC 492631 Query 110933 TGGGCTTCAGCCA-ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGAT 110991 | | | |||| | ||| | | |||| ||||| || ||||| || ||||| Sbjct 492630 TCCTCCTTGGCCAGCTGCACCG-ACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGAT 492572 Query 110992 ACGAGCATTCATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAAAATAAATA 111050 || | || || || || || || || || ||| | || Sbjct 492571 CTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATA-CGGAGAGCCAGGAAGG 492513 Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || ||||| || ||||| | ||| || || | ||| ||||| || || || | Sbjct 492512 CATCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAG 492453 Query 111111 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 111170 | || ||| || || || ||| |||| || ||| || || | ||| | || Sbjct 492452 CCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCT 492393 Query 111171 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG------ACAT 111224 |||| || || || || | | || || || || | || ||| ||| Sbjct 492392 GGGTGACCTCGTGGAGCTTCTGGAAGTC----GT-AGACTC-CCTCGTTGTAGTCAACAA 492339 Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 | | || ||||||| || |||| ||||| ||||| |||||| | ||||| Sbjct 492338 AGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACT 492279 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 111344 | | ||| || || || | |||||| || || || || | ||||| ||||| |||| Sbjct 492278 CGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCT 492219 Query 111345 TCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 | |||| |||||||||||||||||| |||| | || ||||| ||||| | | || Sbjct 492218 TGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGA 492159 Query 111405 GAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCC 111460 | || || | ||| | | || | | || |||| ||| | || | ||| | | Sbjct 492158 GGATGGCATACCAGAGCTTCTGAGCCT----TCATGGTCTTGCGACCCTTGCCCATCTGC 492103 Query 111461 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCC 111520 |||||||| ||| | ||| ||||||||||| || ||||| || || || || Sbjct 492102 TCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGG-GCA 492044 Query 111521 TT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC 111579 || || || || | |||| ||| | ||| | ||| |||| ||||||||| ||||| Sbjct 492043 TTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTC 491984 Query 111580 TGGAATCCACAGG--GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTG 111637 |||||||| ||| || |||| || || | ||| |||| || | || ||||| Sbjct 491983 GGGAATCCAGAGGGCGAGGAAA--AGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTC 491926 Query 111638 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 111697 || || || | ||| || | || ||| |||||||| |||||||| || | |||| | Sbjct 491925 TTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAA 491866 Query 111698 GATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCG 111753 | || | | | | ||| | || | || ||||| || ||| ||| || || || Sbjct 491865 GCACCGGGGCGCTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACG 491807 Query 111754 AAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGC 111813 ||||| || | | ||| | || ||| || || || |||| || |||| Sbjct 491806 GAGCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGC 491747 Query 111814 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACAC 111871 | | |||| || | ||||| || || ||| ||| ||||| | ||||| | Sbjct 491746 GCGGATGCGGTGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AG 491688 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | | || || |||||||||| | || ||||||||||| || ||| ||||||||| Sbjct 491687 T-CTTGAGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAA 491629 Query 111932 CTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 ||||| ||| || || || ||||| || |||||||| || || | |||||| ||| Sbjct 491628 GAGGACAGCTG-GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGA- 491571 Query 111991 CATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048 | | |||| |||||| || ||| || || | ||| |||| ||| || || | Sbjct 491570 -AGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAG 491512 Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || || | ||||| ||||||| ||||| ||| || Sbjct 491511 ATACCAACGGCGACACGCATGATCATGTGCTGGGG 491477 >seq463 Length=83378 Score = 105 bits (116), Expect = 8e-18 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| ||||||||||| || || || || || || |||||| ||||| ||||| ||||| Sbjct 56640 GTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACC 56581 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | | ||| | ||| ||||||||||||||| || Sbjct 56580 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGC 56521 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCAT 122846 || || |||| || || | |||||||||| ||||| |||| || ||| |||| Sbjct 56520 GGCGAAGGCAACGAGACGCTGGGCGAAGGAG---GACTTCTCATCGCTAATCCACTTCAG 56464 Query 122847 TGCCCATTTCGCCTTCTT 122864 ||||| | |||||||| Sbjct 56463 GGCCCAGTCGGCCTTCTT 56446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028263209600