Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq188 316 3e-81
seq463 138 1e-27
>seq188
Length=580545
Score = 316 bits (350), Expect = 3e-81
Identities = 1183/1834 (65%), Gaps = 47/1834 (3%)
Strand=Plus/Minus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
||||||||||||| || |||| | || ||||||||||| |||||||| || |
Sbjct 493232 TGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGGC 493173
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
| |||||||| | | |||||| || | |||| | ||| || | ||||
Sbjct 493172 CGAGCTTCCAGCCGGCGAAATGCATGCTGGTTATCTTGCCCATGGTCGGGTCCTTCATGT 493113
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
| ||| | || || || ||||||||| || || || || ||||| | | |
Sbjct 493112 GAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAA 493053
Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044
|| | | ||| ||||| |||||| |||| ||| ||| | ||| || || |
Sbjct 493052 CAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGT 492993
Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 118101
||| || |||||||| ||| || | | |||| | | |||||| | | |
Sbjct 492992 TGGGGATGTTCTGGATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGG 492936
Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161
|||| ||||| || | |||||||| || ||| |||||||| |||||||
Sbjct 492935 ACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCAC 492876
Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221
| || || || | | | ||||| |||| ||||| |||||||||||||| ||||| |
Sbjct 492875 CAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGC 492816
Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281
||||||| || | ||| ||| || |||||||| || | |||||| ||| |||| ||
Sbjct 492815 CCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACAC 492756
Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341
| | | | |||| | ||||| | ||| |||||||| || | | || | |
Sbjct 492755 CGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAGAGATCCGAGGGCTTGACAT 492696
Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401
|||||| ||| |||||||||| || || || | || || ||||| | |||| || |
Sbjct 492695 TCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGG 492636
Query 118402 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458
||||||| ||| |||| | | || | | |||||| ||||| || || || |
Sbjct 492635 GGCCCTCCTCCTTGGCCAGCTGCACCGACATGGT---GAGGGCAGCGTGGTAGATGGTCT 492579
Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAA 118518
| || || || | | |||||| || || || | | ||| |
Sbjct 492578 CGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCA 492519
Query 118519 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 118578
|| |||| || ||||| ||||||||||| || || ||||| || | ||| || |
Sbjct 492518 GGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGT 492459
Query 118579 TCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 118638
| ||||| || || || || || ||||| | || || || || | |
Sbjct 492458 TGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAA 492399
Query 118639 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTG--- 118694
| |||| |||| || || ||||| | | | || | ||| | ||| | | |
Sbjct 492398 CGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACTCC----CTCGTTGTAGTCA 492343
Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754
||| | | || ||||||| || ||||| || || |||| | |||||| | |
Sbjct 492342 ACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAG 492283
Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814
||||| ||||| |||||||| | ||| || || || ||||| | |||||| || ||
Sbjct 492282 TACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTG 492223
Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874
||| ||| ||||||||||| |||||| | || | || ||||| || |||| |
Sbjct 492222 CTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCC 492163
Query 118875 TTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGG----CTCGCCCCT 118929
| ||| || || | ||||| | || | ||| || ||| ||| || |||| |
Sbjct 492162 TCGAGGATGGCATACCAGAGCTTCTG-AGCCTTCA---TGGTCTTGCGACCCTTGCCCAT 492107
Query 118930 CTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTG 118989
|| | |||||||| ||| | ||| |||||||| || || | || | || || |
Sbjct 492106 CTGC-TCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAG 492048
Query 118990 GTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048
| || || |||| || | ||||| ||| | ||| || ||| |||| ||||||||||
Sbjct 492047 G-GCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAG 491989
Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 119108
||||| || |||||||| || ||| || || || |||| | || || | || ||
Sbjct 491988 AGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGG 491929
Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168
|| ||||| ||||| ||||| | || ||| |||||||| || || ||||| | |||
Sbjct 491928 TTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCG 491869
Query 119169 ATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222
| | || | ||| | | ||| |||||| || || | |||||| ||| ||
Sbjct 491868 AAAGCACCGGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 491812
Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTA 119282
||||| ||||| || | || ||| | ||| || || || || |||| ||
Sbjct 491811 ACACGGAGCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCG 491752
Query 119283 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 119342
|||| | || ||||| || | |||||| || || ||| ||| ||||| |||
Sbjct 491751 GTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCG 491692
Query 119343 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 119402
|| | |||| || | ||||| || || || ||||| |||| | ||| |||||||
Sbjct 491691 CAAGTCTTGAGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAG 491632
Query 119403 CAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGAT 119461
|| |||| || |||||| || ||||| ||||||||||| || || | ||||| |
Sbjct 491631 CAAGAGGACAGCTG-GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGT 491573
Query 119462 GAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 119519
|| | | |||| |||||| || |||||| || | |||| || ||| || ||
Sbjct 491572 GA--AGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCC 491515
Query 119520 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 119579
||||| | | ||| ||||| | ||||| |||||| | || | | || ||
Sbjct 491514 CAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCA 491455
Query 119580 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613
||| | ||||||| ||||||| |||||||
Sbjct 491454 AGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGA 491421
>seq463
Length=83378
Score = 138 bits (152), Expect = 1e-27
Identities = 346/519 (67%), Gaps = 14/519 (3%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| |||| |||||||| |||||||| ||||| ||| ||| | ||| ||||||||
Sbjct 56939 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 56880
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846
|| ||||| ||||| || || | | || || | || | | ||| ||
Sbjct 56879 AAGTCAAAGGGGTTGGAAGACTTGTAGACCT-TGTCATTGCCGAGAGCAACCAAGAGGCG 56821
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | || |||||||||||| |||| | ||||||||| |||| || ||
Sbjct 56820 GTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAGCGCA 56761
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || | |||| ||| |||||| | ||||| || | |||| | |
Sbjct 56760 AGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACGATGATGTCCTC 56701
Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|||| || | ||| || | | ||| | || | || ||| || ||| || ||
Sbjct 56700 AATGACCTGCTTGCTGGGGCGGTTCTTGAGGTGAGAGTAGAGGAG--GCA-GGCGAAGTC 56644
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| |||||||| ||||| ||||| || || || |||||| |||||| ||||| ||
Sbjct 56643 GGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAG 56584
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| |||||||| | |||||| || | || | || ||||||||| ||||| ||
Sbjct 56583 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAAC 56524
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200
||||| |||| |||||||| || ||||| |||||| ||| || ||||||
Sbjct 56523 GGCGGCGAAGGCAACGAGACGCTGGGCGAAGGA---GGACTTCTCATCGCTAATCCACTT 56467
Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239
|| ||||| | ||||| || ||| || || || ||
Sbjct 56466 CAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGAACTGT 56428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618431520310560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |