Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq188 293 3e-74
seq463 143 3e-29
>seq188
Length=580545
Score = 293 bits (324), Expect = 3e-74
Identities = 976/1496 (65%), Gaps = 33/1496 (2%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || ||| | ||||| || || ||| |||| |||
Sbjct 491477 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 491536
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| || || ||| || |||||| |||| | | ||| |||||| | || || ||||
Sbjct 491537 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCCACACTCT 491594
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| || ||||| || |||| ||||| ||||||||| ||| || |||||||
Sbjct 491595 TCAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGG 491654
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457
|||| || | |||||||||| || || | | | | ||||| | ||||| ||| |||
Sbjct 491655 ACTCTATTGAGGGTATCTATGACACCCTCAAG-ACT-TGCGCCATGATCTCCAAGATGGC 491712
Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517
|| || ||||| | || |||| | | |||| || |||| || ||
Sbjct 491713 CGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCAC 491772
Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577
|| ||| || | ||| | | || ||||| || || || ||| ||| || |||||
Sbjct 491773 GAACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTA 491832
Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
|| | || | ||| | | | | || || |||| | || |||||||| ||||
Sbjct 491833 CGTCGACCAGGGTGG-CAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGC 491891
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|||| ||| || | || ||| | || ||||| ||||| || | ||||||| ||
Sbjct 491892 ACGCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCG 491951
Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753
||| || || ||| ||| ||||||||||| || |||||||||||||| || ||| |||
Sbjct 491952 CCCGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGA 492011
Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812
||| | ||| ||||| | || || || || || ||||| || |||| | ||
Sbjct 492012 ATGGGGACTGGACTCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCCGACTGCTACGGC 492070
Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGG 104870
||||||||||| ||| | ||| ||||||||| | || || | | | | || |||
Sbjct 492071 GAGGAGTTTGAGGCCTTGTACGAGAAGTACGAGCA-GATGGGCAAGGGTC-GCAAGACCA 492128
Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929
|| ||| | || | | ||| | || || ||| || | || ||||||||||||| ||
Sbjct 492129 TGAAGGCT-CAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCC 492187
Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989
| |||||| ||||| || ||| |||| ||||| || || ||||| | || |||
Sbjct 492188 TTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATC 492247
Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049
|| ||||| ||||| || || || | || | | |||||| |||||
Sbjct 492248 CGCAGCTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTC 492307
Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGA 105108
|| ||||| || || |||| || |||| | ||| || | || || || | | ||
Sbjct 492308 TGCAACCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTC-TACGA 492366
Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168
| | || |||||||| || || | || | ||||| |||||| | || ||
Sbjct 492367 CTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATCGA 492426
Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228
|| ||||| ||| || ||||| || || ||| | ||||| || || ||
Sbjct 492427 CGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATCGG 492486
Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTC 105285
||||||||| |||||||| || |||| ||| | ||| || | | || || ||
Sbjct 492487 TCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGC---CCTTCGAGTC 492543
Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC--CGCTCTT 105343
||| || || |||| | || || |||||||| || ||||| | |||
Sbjct 492544 TCCCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCTCAC 492603
Query 105344 GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403
| | || | || |||| ||| || || || || | || | |||||||| ||
Sbjct 492604 CATGTCGGTGC--AGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCT 492661
Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGAC 105463
| ||| || || | || || | ||| |||||| | | || || | || || |||
Sbjct 492662 GTTTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGAC 492721
Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523
||||| ||| | ||||| | || ||| || | ||| | || ||| ||| ||| | ||
Sbjct 492722 TGGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCG 492781
Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583
|| ||||| || ||| |||| | || |||||||| || || || |||||||| ||||||
Sbjct 492782 CCCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTAC 492841
Query 105584 ACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT 105643
|| | |||||||| | | | | || || || ||||| | ||||||||
Sbjct 492842 ACCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGG 492901
Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 105699
||| || | || ||| || || ||||| |||||| | | |||||| | | |||
Sbjct 492902 CTCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCAT 492957
>seq463
Length=83378
Score = 143 bits (158), Expect = 3e-29
Identities = 168/225 (75%), Gaps = 9/225 (4%)
Strand=Plus/Plus
Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 94779
|||||| |||||||| || || | ||||| || || ||||| |||||||| ||
Sbjct 56422 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGC 56478
Query 94780 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 94839
||| ||||| ||||| || |||| ||| | || || || ||||||||||||
Sbjct 56479 GATGAGAAGTCC---TCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATC 56535
Query 94840 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 94899
|||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| |||
Sbjct 56536 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGT 56595
Query 94900 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
|| ||||||||||||||| ||||||||||| ||||| || |||
Sbjct 56596 CTGACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCAC 56640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583257329598240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |