Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq188 293 3e-74 seq463 143 3e-29 >seq188 Length=580545 Score = 293 bits (324), Expect = 3e-74 Identities = 976/1496 (65%), Gaps = 33/1496 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || ||| | ||||| || || ||| |||| ||| Sbjct 491477 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 491536 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | || || ||| || |||||| |||| | | ||| |||||| | || || |||| Sbjct 491537 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCCACACTCT 491594 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || |||| ||||| ||||||||| ||| || ||||||| Sbjct 491595 TCAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGG 491654 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457 |||| || | |||||||||| || || | | | | ||||| | ||||| ||| ||| Sbjct 491655 ACTCTATTGAGGGTATCTATGACACCCTCAAG-ACT-TGCGCCATGATCTCCAAGATGGC 491712 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517 || || ||||| | || |||| | | |||| || |||| || || Sbjct 491713 CGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCAC 491772 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || ||| || | ||| | | || ||||| || || || ||| ||| || ||||| Sbjct 491773 GAACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTA 491832 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 || | || | ||| | | | | || || |||| | || |||||||| |||| Sbjct 491833 CGTCGACCAGGGTGG-CAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGC 491891 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| || | || ||| | || ||||| ||||| || | ||||||| || Sbjct 491892 ACGCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCG 491951 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| || || ||| ||| ||||||||||| || |||||||||||||| || ||| ||| Sbjct 491952 CCCGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGA 492011 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 ||| | ||| ||||| | || || || || || ||||| || |||| | || Sbjct 492012 ATGGGGACTGGACTCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCCGACTGCTACGGC 492070 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGG 104870 ||||||||||| ||| | ||| ||||||||| | || || | | | | || ||| Sbjct 492071 GAGGAGTTTGAGGCCTTGTACGAGAAGTACGAGCA-GATGGGCAAGGGTC-GCAAGACCA 492128 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 || ||| | || | | ||| | || || ||| || | || ||||||||||||| || Sbjct 492129 TGAAGGCT-CAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCC 492187 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | |||||| ||||| || ||| |||| ||||| || || ||||| | || ||| Sbjct 492188 TTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATC 492247 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || ||||| ||||| || || || | || | | |||||| ||||| Sbjct 492248 CGCAGCTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTC 492307 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGA 105108 || ||||| || || |||| || |||| | ||| || | || || || | | || Sbjct 492308 TGCAACCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTC-TACGA 492366 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | | || |||||||| || || | || | ||||| |||||| | || || Sbjct 492367 CTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATCGA 492426 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 || ||||| ||| || ||||| || || ||| | ||||| || || || Sbjct 492427 CGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATCGG 492486 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTC 105285 ||||||||| |||||||| || |||| ||| | ||| || | | || || || Sbjct 492487 TCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGC---CCTTCGAGTC 492543 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC--CGCTCTT 105343 ||| || || |||| | || || |||||||| || ||||| | ||| Sbjct 492544 TCCCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCTCAC 492603 Query 105344 GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 | | || | || |||| ||| || || || || | || | |||||||| || Sbjct 492604 CATGTCGGTGC--AGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCT 492661 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGAC 105463 | ||| || || | || || | ||| |||||| | | || || | || || ||| Sbjct 492662 GTTTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGAC 492721 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 ||||| ||| | ||||| | || ||| || | ||| | || ||| ||| ||| | || Sbjct 492722 TGGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCG 492781 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583 || ||||| || ||| |||| | || |||||||| || || || |||||||| |||||| Sbjct 492782 CCCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTAC 492841 Query 105584 ACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT 105643 || | |||||||| | | | | || || || ||||| | |||||||| Sbjct 492842 ACCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGG 492901 Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 105699 ||| || | || ||| || || ||||| |||||| | | |||||| | | ||| Sbjct 492902 CTCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCAT 492957 >seq463 Length=83378 Score = 143 bits (158), Expect = 3e-29 Identities = 168/225 (75%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 94779 |||||| |||||||| || || | ||||| || || ||||| |||||||| || Sbjct 56422 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGC 56478 Query 94780 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 94839 ||| ||||| ||||| || |||| ||| | || || || |||||||||||| Sbjct 56479 GATGAGAAGTCC---TCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATC 56535 Query 94840 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 94899 |||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| ||| Sbjct 56536 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGT 56595 Query 94900 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||||||||||||| ||||||||||| ||||| || ||| Sbjct 56596 CTGACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCAC 56640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257329598240