Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq341 143 8e-29 seq213 120 9e-22 seq6 105 2e-17 seq415 86.0 2e-11 >seq341 Length=430742 Score = 143 bits (158), Expect = 8e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || ||||||||||| || ||||| || || || || || Sbjct 392195 TTACTGACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTA 392254 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 |||| || || || ||||| || | || || ||||||||||| ||||| ||||| || Sbjct 392255 ATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTC 392314 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 |||||||| || || || |||||||| || | || || || ||||||| || || | Sbjct 392315 GGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGA 392374 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||||| |||||||| || | || || || ||||| ||||| Sbjct 392375 CTCGACCTCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 392428 Score = 120 bits (132), Expect = 9e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| || ||||| || ||||| Sbjct 392654 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATC 392713 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || || || ||||| | || ||||| ||||| Sbjct 392714 GGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGG 392773 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | || ||||| || || | |||||| | || Sbjct 392774 GGGAATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTC 392833 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| ||||| || | ||||| ||||| || || || || Sbjct 392834 AACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 392872 Score = 107 bits (118), Expect = 6e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | ||||| || ||||| || || || || || || Sbjct 392938 CATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 392997 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || ||||| || || || || || ||||| ||||| Sbjct 392998 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGG 393057 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || ||||| || || | ||| || | || Sbjct 393058 GGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTC 393117 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| || | ||||| ||||| Sbjct 393118 GACCTCAAGGGTGATGGTCTTGCCGGT 393144 >seq213 Length=714089 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || || || || || || Sbjct 265292 CATACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 265233 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || |||||||||||||| || || ||||| ||||| Sbjct 265232 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGG 265173 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| || || | || || | || Sbjct 265172 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTC 265113 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || ||||| || || || || |||||||| Sbjct 265112 CACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 265062 >seq6 Length=793024 Score = 105 bits (116), Expect = 2e-17 Identities = 313/480 (65%), Gaps = 2/480 (0%) Strand=Plus/Minus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || || |||||||| || || || || || || |||| Sbjct 492279 ACTGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATT 492220 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || || | || || || || ||||| || || || || || || || Sbjct 492219 GCCGGCCTCAACGTCCTTCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTACGGC 492160 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || | | || || || |||| || || ||| | ||||||||||| Sbjct 492159 CTGGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTCGGTGGTGGTACC 492100 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| || || || || || | || |||||| Sbjct 492099 TTCGATGTGTCCCTCCTGACGATTGAGGAGGGCATCTTCGAGGTCAAGTCCACCGCTGGT 492040 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || || || ||||| || || || || || Sbjct 492039 GACACCCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCGTCAACGAG 491980 Query 349919 TTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 || ||||| ||||| || | || | || | | || |||| || || | Sbjct 491979 TTCAAGCG-CAAGCACAAGAAGGACCTGTCCTCCAACGCCCGCGCGCTGCGCCGTCTCCG 491921 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 || || ||||| ||||| ||||| || | || || | |||| ||||| || || || Sbjct 491920 CACCGCTTGTGAGCGTGCCAAGCGCACCCTGTCCTCGTCCGCCCAGACCTCCATCGAGAT 491861 Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 || || || || |||| || |||| | || || || ||||| || || || || Sbjct 491860 CGACTCGCTGTTCGAGGGCATCGACTTCTACACCTCCATCACCCGTGCGCGCTTCGAGGA 491801 >seq415 Length=1736781 Score = 86.0 bits (94), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || || ||| || || | |||||| || || ||||| || || Sbjct 732777 CGAGGGACACCAAGCGTGACGTTC---TTGGAAGAAACACCGGCGAAATGGAATGTGTTC 732833 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| |||||||| || || ||||| || Sbjct 732834 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATGACACCGACCATCTCA 732893 Query 377578 CCAGGATTGAC 377588 ||||| |||| Sbjct 732894 CCAGGGCTGAC 732904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515245158842228