Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq341 143 8e-29
seq213 120 9e-22
seq6 105 2e-17
seq415 86.0 2e-11
>seq341
Length=430742
Score = 143 bits (158), Expect = 8e-29
Identities = 172/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | || ||||||||||| || ||||| || || || || ||
Sbjct 392195 TTACTGACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTA 392254
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
|||| || || || ||||| || | || || ||||||||||| ||||| ||||| ||
Sbjct 392255 ATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTC 392314
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683
|||||||| || || || |||||||| || | || || || ||||||| || || |
Sbjct 392315 GGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGA 392374
Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || ||||||| |||||||| || | || || || ||||| |||||
Sbjct 392375 CTCGACCTCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 392428
Score = 120 bits (132), Expect = 9e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || || || ||||| || ||||| || |||||
Sbjct 392654 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATC 392713
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || || || || ||||| | || ||||| |||||
Sbjct 392714 GGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGG 392773
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || |||||||| || | || ||||| || || | |||||| | ||
Sbjct 392774 GGGAATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTC 392833
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||| ||||| || | ||||| ||||| || || || ||
Sbjct 392834 AACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 392872
Score = 107 bits (118), Expect = 6e-18
Identities = 148/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | ||||| || ||||| || || || || || ||
Sbjct 392938 CATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 392997
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || ||||| || || || || || ||||| |||||
Sbjct 392998 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGG 393057
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || ||||| || || | || ||||| || || | ||| || | ||
Sbjct 393058 GGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTC 393117
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| ||||| || | ||||| |||||
Sbjct 393118 GACCTCAAGGGTGATGGTCTTGCCGGT 393144
>seq213
Length=714089
Score = 120 bits (132), Expect = 9e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || ||||| || || || || || ||
Sbjct 265292 CATACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 265233
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || |||||||||||||| || || ||||| |||||
Sbjct 265232 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGG 265173
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || ||||| || || | || || | ||
Sbjct 265172 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTC 265113
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || ||||| || || || || ||||||||
Sbjct 265112 CACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 265062
>seq6
Length=793024
Score = 105 bits (116), Expect = 2e-17
Identities = 313/480 (65%), Gaps = 2/480 (0%)
Strand=Plus/Minus
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
||||| || ||||| || || || |||||||| || || || || || || ||||
Sbjct 492279 ACTGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATT 492220
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | || || || | || || || || ||||| || || || || || || ||
Sbjct 492219 GCCGGCCTCAACGTCCTTCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTACGGC 492160
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
|| || || | | || || || |||| || || ||| | |||||||||||
Sbjct 492159 CTGGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTCGGTGGTGGTACC 492100
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || || || |||| ||||| || || || || || | || ||||||
Sbjct 492099 TTCGATGTGTCCCTCCTGACGATTGAGGAGGGCATCTTCGAGGTCAAGTCCACCGCTGGT 492040
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || || | ||||| || || || || || || ||||| || || || || ||
Sbjct 492039 GACACCCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCGTCAACGAG 491980
Query 349919 TTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977
|| ||||| ||||| || | || | || | | || |||| || || |
Sbjct 491979 TTCAAGCG-CAAGCACAAGAAGGACCTGTCCTCCAACGCCCGCGCGCTGCGCCGTCTCCG 491921
Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037
|| || ||||| ||||| ||||| || | || || | |||| ||||| || || ||
Sbjct 491920 CACCGCTTGTGAGCGTGCCAAGCGCACCCTGTCCTCGTCCGCCCAGACCTCCATCGAGAT 491861
Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097
|| || || || |||| || |||| | || || || ||||| || || || ||
Sbjct 491860 CGACTCGCTGTTCGAGGGCATCGACTTCTACACCTCCATCACCCGTGCGCGCTTCGAGGA 491801
>seq415
Length=1736781
Score = 86.0 bits (94), Expect = 2e-11
Identities = 98/131 (75%), Gaps = 3/131 (2%)
Strand=Plus/Plus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| || |||||| | || || ||| || || | |||||| || || ||||| || ||
Sbjct 732777 CGAGGGACACCAAGCGTGACGTTC---TTGGAAGAAACACCGGCGAAATGGAATGTGTTC 732833
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || |||| |||||||||||| ||||| |||||||| || || ||||| ||
Sbjct 732834 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATGACACCGACCATCTCA 732893
Query 377578 CCAGGATTGAC 377588
||||| ||||
Sbjct 732894 CCAGGGCTGAC 732904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515245158842228
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |