Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq188 322 5e-83
seq282 118 1e-21
>seq188
Length=580545
Score = 322 bits (356), Expect = 5e-83
Identities = 534/764 (70%), Gaps = 24/764 (3%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| |||||| | |||||| ||||||||| ||| ||| || || |||
Sbjct 491490 TCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTCATCGAAACCTACA 491549
Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309
|| | ||| ||| |||| ||| || |||||| | || || || |||||||| ||||
Sbjct 491550 ACCTGATGTCGAGC---AAGTTCTTCACTCACGCCTCTCCCACACTCTTCAACGCCGGTA 491606
Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369
| ||| | ||| |||| |||||||| || | |||||||| ||||| || || |
Sbjct 491607 CCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGACTCTATTGAGG 491666
Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429
| ||||| || || |||||| || ||| ||||||||| | | ||||| || |||
Sbjct 491667 GTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGTGGCATTGGTC 491726
Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487
|| || || | || |||| || | |||| || || || |||||||| | |
Sbjct 491727 TCAACG--TCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAACGGTACCTC 491784
Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547
| | || |||| ||||||||||| |||||||||||||| || || |||||| |||||||
Sbjct 491785 CAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGG 491844
Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607
||| |||||| || | |||||||| ||||| ||||| ||||||||||| | |
Sbjct 491845 TGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACGCCGATGTCTT 491904
Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667
|| || | || |||| ||| || || | || ||| | ||| ||||||||| ||
Sbjct 491905 CGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGACCTTTT 491964
Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727
|| || |||||||| |||||||||||| | | |||||||||| | | ||| |||
Sbjct 491965 CCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGACTGGAC 492024
Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACG 53786
|| |||||||| ||||| ||||| ||||| | | || |||||| ||||||||| | |
Sbjct 492025 TCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTG-CTACGGCGAGGAGTTTGAGG 492083
Query 53787 AGATGTATCGGACGTAC--GCAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840
|||| || |||| |||| | |||| ||| |||| | ||||| |
Sbjct 492084 CCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGC------AAGACCATGAAGGCTC 492137
Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900
|| | ||| |||| |||||| || |||| ||||| || | || | |||| ||
Sbjct 492138 AGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCT 492197
Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944
|||||||| | | |||| |||||||||||||||||| | |||
Sbjct 492198 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGC 492241
Score = 138 bits (152), Expect = 1e-27
Identities = 547/846 (65%), Gaps = 26/846 (3%)
Strand=Plus/Plus
Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156
||||| | ||||| ||||| || || | || || || ||||||||| | |||||
Sbjct 492365 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATC 492424
Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216
||| || ||||||| | | | ||| ||||| |||| | || ||||| ||||||
Sbjct 492425 GACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATC 492484
Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276
| ||||||| ||||| | || || |||| || ||| | |||||||||| ||
Sbjct 492485 GGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGCCCTTCGAGTCT 492544
Query 55277 GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGA 55335
||||| || | ||| || | |||||| || | ||||||| || || |||
Sbjct 492545 CCCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGAC-CATCTACCACGCTGCCCTCAC 492603
Query 55336 GGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGC 55395
|||| || ||||| | | ||||| ||||| |||||| | | ||| || |
Sbjct 492604 CATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTGT 492663
Query 55396 TGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATGTT-TG 55448
| |||| | ||||||| || | ||| | |||| || || | | | ||
Sbjct 492664 TTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTG 492723
Query 55449 ACAAG--TTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCC 55506
| | |||||| | | ||| | | || | |||||||| || ||||| |||||
Sbjct 492724 GGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCC 492783
Query 55507 AATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACAC 55566
||||| || || || | |||||| |||||||||||||| || ||||| |||||
Sbjct 492784 CATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACAC 492843
Query 55567 GACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCT 55626
|||||||||||| ||| || || || |||||||| | ||||| ||
Sbjct 492844 CTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGCT 492903
Query 55627 CGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT-ATT 55681
| | ||||| || | || |||| ||| | || |||| || || |||
Sbjct 492904 CTTGAAGGATCTCGTCGACATGGGTCTGTGG--TCCGATGCCATGAAGAACCGCATCATT 492961
Query 55682 GTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCT-CTGCGTCTCAAGGAGAT 55737
| |||| || ||| ||||||| | | |||||| ||| | |||||| |
Sbjct 492962 GCCGAGAAC---GGTTCCATCCAGAACATCCCCAACATTCCTACTGAG-GTCAAGGCCCT 493017
Query 55738 TTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGG 55797
||| ||| || |||||||| | ||| | | | | | ||| ||| || |||||
Sbjct 493018 GTACAAGACTGTTTGGGAGATCTCGCAGCGTACTGTTGTGCAGATGGCTGCCGACCGTGG 493077
Query 55798 TGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAA 55857
||| | |||||||||||| ||||| || ||||| |||| || | || | ||| |||
Sbjct 493078 TGCCTTCATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGGCAA 493137
Query 55858 GTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCT 55917
| | | | ||||| || ||| |||||| || || |||||||| |||||||| ||
Sbjct 493138 GATAACCAGCATGCATTTCGCCGGCTGGAAGCTCGGCCTGAAGACGGGCATGTACTACCT 493197
Query 55918 GCGGAC 55923
||| ||
Sbjct 493198 GCGCAC 493203
>seq282
Length=820165
Score = 118 bits (130), Expect = 1e-21
Identities = 203/293 (69%), Gaps = 4/293 (1%)
Strand=Plus/Minus
Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369
||||||||||| || ||||||||| ||||| |||||||| | |||||| | |||
Sbjct 181320 AATGTAACGAGGACTGGCAGCATCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGA 181261
Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429
|||||||| | ||| | |||||| | ||| || ||||| || || | | | || ||
Sbjct 181260 CGGCTCCAGGCAGTTGATGTTGTTAGAGCCTACGAAGTTCTGCGCAAGGCCAATGATGGT 181201
Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489
||||| || || || ||||| || | ||||||||| | | ||| || ||||
Sbjct 181200 CTGCTGGAGAGAGGCTTCGCCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCCAA 181141
Query 117490 CTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547
| | |||||| || |||| | |||| |||||| ||||| || || |||||
Sbjct 181140 TTCGACGACCTTCTGATCCTTGAC--TAAGTTCCTCTTGAAACAGGCGTATATAACCTTA 181083
Query 117548 CGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600
||||||| ||||||| ||||| ||| ||||| || ||| || ||||
Sbjct 181082 CGCTGACCGGGCTTCAATCCATCGATGACGGAGGGGATAGATCGCATGTTGTC 181030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212744064800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |