Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq131 114 1e-20 >seq131 Length=561545 Score = 114 bits (126), Expect = 1e-20 Identities = 213/302 (71%), Gaps = 8/302 (3%) Strand=Plus/Plus Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCC 34379 ||| || ||||||||||||| |||| || || || || || |||| ||| ||| || Sbjct 344888 GGGCGTCAAGATCTGGGACGGCAACGGCTCGCGCGAGTTCCTCGACA-GCGTTGGTCTCT 344946 Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 | || || | |||||| | ||||| |||||||| ||||| ||| |||||||||| | Sbjct 344947 CGCACCGCGAAGTTGGCGACCTCGGCCCTGTCTACGGTTTCCAATGGCGACACTTTGGCG 345006 Query 34440 CGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTA 34497 | |||||| | | || ||| |||| || |||| ||||| | |||||||| || | | Sbjct 345007 CCGAGTAT-GTCGACGCCAAGACGGATTACACGGGCCAGGGCGTCGACCAGCTCGCCG-A 345064 Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557 || ||| ||| ||||| ||| || | ||| | | ||| | | |||||||||| Sbjct 345065 GGTCATCCACAAGCTGAAGACGAATCCGTACGACCGCCGCATCCTCCTCAGCGCGTGGAA 345124 Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACG 34616 ||| ||| || |||||| ||||| || ||||||| | ||| || ||||||| Sbjct 345125 CCCCGCGGACCTAAAGAAGATGGCCCTCCCGCCATGCCACA-TGTTTGCGCAGTTCTACG 345183 Query 34617 TC 34618 || Sbjct 345184 TC 345185 Score = 114 bits (126), Expect = 1e-20 Identities = 213/302 (71%), Gaps = 8/302 (3%) Strand=Plus/Minus Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 ||||||||| || ||| | ||||||| || ||||| |||||| || ||| | Sbjct 345185 GACGTAGAACTGCGCAAACA-TGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGG 345127 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 |||||||||||| | | ||| | | ||| | || ||| ||||| ||| ||| | Sbjct 345126 GGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGATGA 345067 Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903 | | | || |||||||| | ||||| |||| || |||| ||| || | | |||||| Sbjct 345066 CCT-CGGCGAGCTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGAC-ATACTC 345009 Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963 || |||||||||| ||| ||||| |||||||| ||||| | |||||| | || || Sbjct 345008 GGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTG 344949 Query 6964 TGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCC 7022 | || ||| ||| |||| || || || || || |||| ||||||||||||| || | Sbjct 344948 CGAGAGACCAACGC-TGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGC 344890 Query 7023 CC 7024 || Sbjct 344889 CC 344888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259732838720