Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq131 98.7 7e-16
>seq131
Length=561545
Score = 98.7 bits (108), Expect = 7e-16
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 27499 TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 27558
||||| || || || || | ||||||||| ||||| || || || ||||| || ||||
Sbjct 345013 TACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCG 344954
Query 27559 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 27618
| |||| || || |||| | || || | || |||||| |||||||||||||
Sbjct 344953 CGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTG 344894
Query 27619 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTC 27677
|| ||| |||| || | |||| |||| ||||| ||||||||||||||||||
Sbjct 344893 ACGCCCGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTC 344835
Query 27678 CTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726
| | |||||| | || ||||| | ||| || || |||||||| |||
Sbjct 344834 AGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTAGTAAGGAGGGGCAAC 344786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369505056396356
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |