Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq341 156 1e-32 seq213 132 1e-25 seq207 122 2e-22 >seq341 Length=430742 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || || ||||| ||||| ||| |||||| Sbjct 392653 CAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCAGAC 392594 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 392593 ACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAG 392534 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||||||||| ||||| |||||||| | || || | || || ||| || Sbjct 392533 CGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACATC 392474 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| ||||| Sbjct 392473 CAGAAGGAGTCTACCCTGCACCTTGT 392448 Score = 132 bits (146), Expect = 1e-25 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || ||||| ||||| || || ||||| || || ||| Sbjct 392425 CAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCGGAC 392366 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || || ||||| |||||||| Sbjct 392365 ACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAG 392306 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || |||||||| || || || ||| | || ||||| | || |||| ||||| ||| | Sbjct 392305 CGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCAC-CTTGAGTGATTACAACAT 392247 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || || || || || |||||||| Sbjct 392246 CCAGAAGGAGTCGACGCTTCATCTTGT 392220 Score = 123 bits (136), Expect = 6e-23 Identities = 147/198 (74%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || || || || |||||||| ||||| || || || ||||||| Sbjct 392874 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 392815 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| ||||||||||||||| || || || || || |||||||| || | | Sbjct 392814 ACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCTTGA 392755 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || || ||||| || || ||| |||| || ||||||| ||| | || || | Sbjct 392754 TCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTCAGAAGG 392695 Query 178111 AATCAACACTGCATCTTG 178128 | || || || || |||| Sbjct 392694 AGTCCACCCTCCA-CTTG 392678 Score = 122 bits (134), Expect = 2e-22 Identities = 141/189 (75%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| ||||| || ||| || |||||||| || ||||| Sbjct 393146 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTCAAGT 393087 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||| |||||||| || || || || || |||||||| || || || |||||||||| Sbjct 393086 CAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATTTTCGCCGGAA 393027 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || || || | || || |||| || ||| |||| || || || || || | Sbjct 393026 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTC 392967 Query 178123 ATCTTGTTT 178131 | |||| || Sbjct 392966 A-CTTGGTT 392959 >seq213 Length=714089 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 265065 CAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 265124 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 265125 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 265184 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| || || | || || |||| || ||| || Sbjct 265185 CGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 265244 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 265245 CAGAAGGAGTCCACCCTTCA-CTTG 265268 >seq207 Length=219550 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || || ||||| ||||| || ||| ||||| || Sbjct 185194 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGAT 185253 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || ||||| || |||||||| || | Sbjct 185254 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 185313 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| || || | || || |||| || ||| |||| || Sbjct 185314 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 185373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723858744344