Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq298 196 6e-45 >seq298 Length=128316 Score = 196 bits (216), Expect = 6e-45 Identities = 419/628 (67%), Gaps = 56/628 (9%) Strand=Plus/Plus Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCG 145749 || ||||||| |||||| || || || |||| |||||| | ||| || || || Sbjct 44364 TCAACGTGGTCAGCGTAGACATGTGCATCGCCCATGACGTGCGTCAAGCTGCCAGGGACG 44423 Query 145750 AGGCC-CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 ||| | | || | |||| | ||||| |||||||| | |||||| || ||||||||||| Sbjct 44424 AGGTCACATGCGC-GGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGG 44482 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC------ 145862 ||| || || ||||| || | || |||||||||||||| ||| || | ||| Sbjct 44483 CACGCCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTTGG 44542 Query 145863 ----------------------------GCCCGCC--------ACGTAGAACTG-GCACA 145885 |||||| ||||||||||| ||| | Sbjct 44543 CTTCTCTCCGTCAGCGGGTGCACCGCGGGCCCGCGGGTAGGAGACGTAGAACTGCGCAAA 44602 Query 145886 GGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGA 145945 | |||||| ||||| |||||||| |||||||| |||||||| ||| |||||| Sbjct 44603 C-ATGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGA 44661 Query 145946 CGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGT 146002 || | | || ||| || ||| |||| | || || | || |||||||| Sbjct 44662 GGA---TGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGATGACCTCGGCGAGCTGGT 44718 Query 146003 CCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCC 146062 | |||||||| ||| |||||| ||||||| ||| || ||| |||| || ||||| | || Sbjct 44719 CGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCC 44778 Query 146063 ACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGG 146122 | ||||| |||||||| || || ||||| || || | |||| || || | | | Sbjct 44779 ATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGT 44838 Query 146123 CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAGCTC 146180 ||||||| || || || |||||| ||||||||||||||||||| |||||| || | | Sbjct 44839 CGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCTCGCTCAGTG--C 44896 Query 146181 ATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAA 146240 |||| ||| ||| || |||||| |||||||| ||| ||| | | ||| Sbjct 44897 GAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTCAGCGATGACGGCGCGAAGGAA 44956 Query 146241 GACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 ||| | ||| || || || ||||| ||| Sbjct 44957 GACGCGCTTCGTAGTAAGGAGGGGCAAC 44984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590069084745840