Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq268 172 6e-38
seq439 134 1e-26
seq356 129 6e-25
seq836 120 3e-22
>seq268
Length=131150
Score = 172 bits (190), Expect = 6e-38
Identities = 213/287 (74%), Gaps = 7/287 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||||| ||||||| | ||||||
Sbjct 102922 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACCTG 102981
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT----TGAACGACAACGAGCGCCATTTCATCA 116750
|||||||| | | | ||||||| | | | | ||||| | ||| | ||||||
Sbjct 102982 TCCAAGGATCTCCA-CGACTGGAA-CAATAAGATCAACGAGGATGAGAAGTACTTCATCT 103039
Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810
|||| | || ||||| |||||||| |||||||| ||||| ||||| |||||||||
Sbjct 103040 CGCACATCCTCGCCTTCTTCGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGTCGAGC 103099
Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
| ||| ||||| ||||| ||||||| || |||||||| ||||| || ||| |
Sbjct 103100 GCTTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATGA 103159
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||||| | ||||| || | || ||| ||||||||||| |||
Sbjct 103160 TGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATCGACACCTAC 103206
Score = 161 bits (178), Expect = 1e-34
Identities = 312/455 (69%), Gaps = 4/455 (1%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040
|||||||||| ||||| ||| ||||| || |||| | || |||||| | ||||
Sbjct 103331 AGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGAT-GAGAAGTCCTCCTTCGCCCAGCGT 103389
Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100
|| || |||||||| ||||| ||||| ||||||| || |||||| |||| ||
Sbjct 103390 CTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTC 103449
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160
||||||||||| || || || |||||||| ||||| ||| ||||||||| ||||| |
Sbjct 103450 TGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGT 103509
Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220
|| |||||||| || |||||| ||||| | || | | || | | | || ||
Sbjct 103510 GATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCACCTCAAGAACCGCCCC 103569
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
||| | | | | ||| ||| || ||| || ||| || |||||| |||||
Sbjct 103570 AGCAAGCAGGTCATTGAGGACATCATCGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTG 103629
Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339
||||| || ||||| |||| |||||| || | || | | | |||| ||| |||||
Sbjct 103630 ACCGAGGCTCTGCC-TTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACAT 103688
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
||||| || |||||| | || || | | || | | | |||| |||||| | |
Sbjct 103689 TGAGTTTGTTGCCGACCGCCTCTTGGTTGCTCTCGGCAATGACAAGGTCTACAAGTCTTC 103748
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434
|||||| | ||||| ||| | ||||||| |||
Sbjct 103749 CAACCCCTTTGACTTCATGGAGAACATCTCCCTGG 103783
>seq439
Length=70108
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || ||||| || || |||||| | || || || | ||
Sbjct 4106 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 4047
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| |||||||||||| | ||||||
Sbjct 4046 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3987
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || || || ||||| || |||| ||||||||| ||||||||||
Sbjct 3986 CAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 3927
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| |||| || || | || ||||| || | || ||
Sbjct 3926 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGCCTGCGTGGTGG 3880
>seq356
Length=453554
Score = 129 bits (142), Expect = 6e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| || || ||| | || |||||| | |
Sbjct 345366 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 345425
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || || | ||||| ||||| |||||| | |||||
Sbjct 345426 GACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 345484
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | ||| || || |||||||| || | |||||||| ||||||||
Sbjct 345485 GCAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 345544
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || ||||| || ||
Sbjct 345545 CATCCAGAAGGAGTCTACCCTGCACCTTGT 345574
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| ||||| ||||||||| | || ||||| || |||| | | | | | |||||
Sbjct 344876 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTCAAGT 344935
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
||| || | ||||| |||||||| ||| | |||||||| || || || | ||| || |
Sbjct 344936 CAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATTTTCGCCGGAA 344995
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| ||||| || |||| |||||||| |||||||||||||||||||||| |||| || |
Sbjct 344996 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTC 345055
Query 40892 A 40892
|
Sbjct 345056 A 345056
Score = 123 bits (136), Expect = 3e-23
Identities = 154/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 40694 AAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA 40753
|| || |||| || ||||| || ||||| ||||||||| | || || || | | || |
Sbjct 345142 AACTAGTCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATA 345201
Query 40754 GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAAC 40813
| | | | ||||| ||| |||| |||||||||||||| ||| | |||||||| |
Sbjct 345202 CCATCGACAATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGC 345261
Query 40814 GACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 40873
| | |||| ||| ||||| ||||| || |||| || ||||| ||| |||||||| |
Sbjct 345262 GCTTGATCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTC 345321
Query 40874 AGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||| |||| || || | ||| ||||
Sbjct 345322 AGAAGGAGTCCACCCTCCACTTGGTGCTGCG 345352
Score = 105 bits (116), Expect = 7e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || | || || || || || || | || ||||| | |
Sbjct 345594 ATGCAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCG 345653
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || |||| ||||| || |||| ||||| |||||||| || | |||||
Sbjct 345654 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 345712
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || || || ||| |||| || | |||||| | | || |||||
Sbjct 345713 GCAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAA 345772
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | ||||| ||||| ||
Sbjct 345773 CATCCAGAAGGAGTCGACGCTTCATCTTGT 345802
>seq836
Length=245415
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| || | |||| |
Sbjct 44461 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 44402
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| | |||||||| || |
Sbjct 44401 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 44342
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || |||| ||||||||| |||||||||||||||||||
Sbjct 44341 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 44282
Query 40879 G 40879
|
Sbjct 44281 G 44281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515212463508960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |