Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq955 257 4e-64 >seq955 Length=418 Score = 257 bits (284), Expect = 4e-64 Identities = 249/320 (78%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 4854 TCCTGAACCCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAAGGCCGCTATA 4913 ||||||||||||| ||||||||| |||||| |||| ||||| || || |||||| Sbjct 407 TCCTGAACCCGCGTGACTGGCACGCCATCGCACTGCTAAAAGATTCGGATGGTCGCTATC 348 Query 4914 TCTTCGGTGGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTTCCGA 4973 | |||||||| || ||| ||| || || ||||||||||| |||| || || | | Sbjct 347 TGTTCGGTGGCCCGGCGGCGTTCGCCGCAAAAGTCATGTGGGGCCTGCCGGTTGTGGCCA 288 Query 4974 CTAAGGCGCAGGCCGCCGGCACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAGGTCT 5033 | ||||| ||||| |||||||| ||||| ||||||||||| |||| || ||| ||| Sbjct 287 CCAAGGCCCAGGCGCAAGGCACCTTCACCGTCGGCGGTTTCGACCTGGCATCGCAGATCT 228 Query 5034 GGGATCGCATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTGAAAA 5093 |||| |||||||| || ||| | || | ||| | | || ||||| ||||||||||| | Sbjct 227 GGGACCGCATGGACGCGACCATCGAGATCAGCAATCAGGATCGCGACAACTTCGTGAAGA 168 Query 5094 ACATGCTGACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCACATTATCGCCCGACAGCAA 5153 ||||||||||||||||||| ||||||||||||||| || | || || || ||||| || | Sbjct 167 ACATGCTGACCATCCTGTGTGAAGAGCGTCTGGCGGTGACCCACTACCGTCCGACCGCGA 108 Query 5154 TCATCAAGGGCACCTTCTCT 5173 | ||||||||||| ||| || Sbjct 107 TGATCAAGGGCACTTTCACT 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130279981739676