Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq82 118 2e-21
seq662 93.3 9e-14
>seq82
Length=153332
Score = 118 bits (130), Expect = 2e-21
Identities = 378/581 (65%), Gaps = 13/581 (2%)
Strand=Plus/Plus
Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892
||||| || |||||| ||| || |||||||| |||| |||||||| | || ||
Sbjct 71324 TTCAAGACTTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATTGCCGAGAGACCC 71383
Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952
||||||||| | ||||| || || || || || || ||| | ||| |||| ||
Sbjct 71384 CAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTCATC 71443
Query 248953 GAGACGTACACCGGAATGA-GTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAA 249011
|| || |||| | ||| | | | | | | || || ||| | || || ||||||||
Sbjct 71444 GAAACCTACAACCTGATGTCGAGCAAGTTCT-TCACTCACGCCTCTCCCACACTCTTCAA 71502
Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071
|||||||||| | |||||| ||| ||||| || | | |||| | || |||||
Sbjct 71503 CGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGACTC 71562
Query 249072 TGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCG 249130
| | || || || |||||||| || || || | || | ||| || || | || || |
Sbjct 71563 TATTGAGGGTATCTATGACACCCTCAAGACTTGC-GCCATGATCTCCAAGATGGCCGGTG 71621
Query 249131 GAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATG 249190
| || |||||| |||| | |||||| || | || || || || || || || |
Sbjct 71622 GCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAACG 71681
Query 249191 GGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCA 249250
| | | ||| |||| || | || || ||| | ||| || | | | ||
Sbjct 71682 GTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCG 71741
Query 249251 ACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACG 249304
|||||| || ||||| || | |||||||| || | || |||||||
Sbjct 71742 ACCAGGGTGGCAACAAGCGCC---CCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACG 71798
Query 249305 CCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGC 249364
||||| | || || ||| |||| ||| |||||| ||||||| ||| | | || |
Sbjct 71799 CCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCC 71858
Query 249365 GTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405
||||||| ||| || ||| ||| | ||||| | ||||||
Sbjct 71859 GTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATG 71899
>seq662
Length=295755
Score = 93.3 bits (102), Expect = 9e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 254201 CTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCA 254260
||||||||| || ||| || | ||||| |||||||| || | ||||| ||||||||
Sbjct 179823 CTGTCCGCCCTTTAAGATCATCATCCTCGACGAGGCCGATTCGATGACCCAGGACGCGCA 179764
Query 254261 GTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTG 254320
| ||||||||| || || |||||||| || | | || || || ||||| | ||
Sbjct 179763 GAGCGCCCTCCGTCGGACCATGGAGACATACAGCAAGATTACACGGTTCTGCCTCATCTG 179704
Query 254321 CAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379
||||||||| || ||||| | ||| || || || ||| ||||||||| ||||
Sbjct 179703 CAACTACGTCACGCGCATCATTGACCCTCTTGCCAGCCGTTGCAGCAAGTTTCGCTTCA 179645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073752009516928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |