Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq439 118 8e-22
seq356 116 3e-21
seq836 102 6e-17
>seq439
Length=70108
Score = 118 bits (130), Expect = 8e-22
Identities = 157/217 (72%), Gaps = 1/217 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| ||||||||| |||||||||||| || ||| |||| ||
Sbjct 3898 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 3957
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||| || || |||| ||||| ||||| || || | ||||||||||||
Sbjct 3958 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 4017
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| || |||||
Sbjct 4018 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTA 4077
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343
||||| || ||||| || ||||| |||||| ||||||
Sbjct 4078 CCCGTTAGGGTCTTGACGAAGATCTGCATGATTGCCT 4114
>seq356
Length=453554
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
|||||| || ||||||||| ||||||||||| ||| |||| | || ||||| ||
Sbjct 345569 GTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTG 345510
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||||||||||| |||| ||||| |||||||| || | ||||||||||||| || ||
Sbjct 345509 CTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTT 345450
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | |||| || ||||| | |||||| |||||||| ||
Sbjct 345449 CGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGT 345390
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| || ||||| |||||
Sbjct 345389 GAGGGTCTTGACGAAGATCTGCAT 345366
Score = 100 bits (110), Expect = 2e-16
Identities = 150/209 (72%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || ||||| ||||||||| |||||||| || ||| |||| | || ||||
Sbjct 345801 CAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCCTCCA 345742
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
|| || || || || || | ||||| ||||||||||| | |||||||||||| ||
Sbjct 345741 ACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAA 345682
Query 45249 TTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
| || ||| | || | || | ||||| | ||| ||||| | |||||||||||
Sbjct 345681 TCTTCGACTTGA-CGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTTT 345623
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| ||||| || || ||||||||
Sbjct 345622 CCAGTCAAGGTCTTGACGAAAATTTGCAT 345594
Score = 98.7 bits (108), Expect = 8e-16
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| ||||||||| |||||||||||| ||| ||| |||| ||
Sbjct 345062 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 345003
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| || ||||||||||| |||| ||||| ||||| || || | ||||||||||||
Sbjct 345002 AGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 344946
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| |||||||||||||||||| ||| ||| || |||| ||
Sbjct 345346 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCA 345287
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| ||||| ||||| ||||| || || | ||||| |||||| |
Sbjct 345286 AGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGA 345227
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| ||| || | | | | || | ||| ||||| | ||| || ||||||
Sbjct 345226 ATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTG 345167
Query 45308 CCCGTCAGAGTCTTCAC 45324
|| || || ||||| ||
Sbjct 345166 CCGGTAAGCGTCTTGAC 345150
>seq836
Length=245415
Score = 102 bits (112), Expect = 6e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206
||||||| |||||||||||| || ||| |||| || || || || |||||||| |
Sbjct 44281 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 44340
Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266
|||| ||||| |||||||| || | |||||||||||| || || ||| ||
Sbjct 44341 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 44400
Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326
| | ||||| ||| ||||| | |||||| ||||| |||||||| |||||||| |
Sbjct 44401 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 44460
Query 45327 A 45327
|
Sbjct 44461 A 44461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395070163531966
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |