Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq298 113 4e-20 >seq298 Length=128316 Score = 113 bits (124), Expect = 4e-20 Identities = 379/582 (65%), Gaps = 60/582 (10%) Strand=Plus/Plus Query 20930 ATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGT 20989 ||||||||||| ||| || || || || |||| | |||| ||| || || ||| Sbjct 44363 ATCAACGTGGTCAGCGTAGACATGTGCATCGCCCATGACGTGCGTCAAG-CTGCCAGGGA 44421 Query 20990 C-AGGCC-CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047 | ||| | | || || | || |||| | |||||| || |||||||| |||||||| || Sbjct 44422 CGAGGTCACATG-CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAG 44480 Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG---------- 21097 || || ||||||||||| ||| ||||| |||||||||||| ||| ||| Sbjct 44481 GGCACGCCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTT 44540 Query 21098 -------CTCC-------------CCCCGAGCC------------ACGTAAAACTGACAC 21125 |||| || || ||| ||||| ||||| | | Sbjct 44541 GGCTTCTCTCCGTCAGCGGGTGCACCGCGGGCCCGCGGGTAGGAGACGTAGAACTG-CGC 44599 Query 21126 AAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184 ||| | ||| || || ||||| |||||| | |||||||||||||||||||||| | Sbjct 44600 AAACATGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAG 44659 Query 21185 AACGATGCGCCGATCGTGGGGCCGCCTGTTAA----TTAGATCCACCACGTAACGCAGCT 21240 | |||||| || |||| || | | || | | ||| ||| || || |||| Sbjct 44660 GAGGATGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGAT-GACCTCG--GCG-AGCT 44715 Query 21241 GGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTC 21300 |||| || ||||| ||| ||| | | | ||| | ||||| || ||||| |||| Sbjct 44716 GGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTC 44775 Query 21301 TCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCG 21360 ||| ||||| ||||| || || || || ||||| | ||||| | | || || || Sbjct 44776 GCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAG-AGACCAACG 44834 Query 21361 CCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG-CCGCGGCGCGACAG 21418 | | | | || |||| || |||| ||||||| || || ||| |||| ||| ||| Sbjct 44835 CTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCTCGC-TCAG 44893 Query 21419 TTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTC 21460 | || |||| ||| |||| || |||||||||| ||| Sbjct 44894 TGCGAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTC 44935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427770546658080