Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq82 176 7e-39 seq268 122 1e-22 >seq82 Length=153332 Score = 176 bits (194), Expect = 7e-39 Identities = 347/508 (68%), Gaps = 4/508 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| | ||| | || ||||||||||| || Sbjct 71744 CAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACGCCGAT 71803 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||||| | || ||||||| ||| ||| || |||| || ||| | ||| Sbjct 71804 GTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGAC 71863 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || |||||| | || || | ||||||||| | || | | ||| || Sbjct 71864 CTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGAC 71923 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || | || || ||| |||| |||| ||||| |||||| Sbjct 71924 TGGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTT 71983 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 |||||| |||| | |||||||| |||| | || |||| | | | || | Sbjct 71984 GAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCA-TGAAGGCTC- 72041 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | |||||| | ||| ||| |||||||| | || | ||| |||| Sbjct 72042 AGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCT 72101 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| ||| || ||||| |||||||| || | ||||| ||| |||||| Sbjct 72102 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATCCGCAGCTCCA 72161 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | || |||||||| ||| | |||||| | | || || ||| || || ||| |||| Sbjct 72162 ACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTGCAACCTGG 72221 Query 97354 CATCGGTCAATCTGCCCAAGTTTGTAGA 97381 | ||| || ||||||| ||||| || Sbjct 72222 CCTCGCTCGCCCTGCCCACCTTTGTTGA 72249 >seq268 Length=131150 Score = 122 bits (134), Expect = 1e-22 Identities = 309/467 (66%), Gaps = 31/467 (7%) Strand=Plus/Plus Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 || || ||||| || | |||| | | || || || ||||||||||| ||||| |||||| Sbjct 103363 GATGAGAAGTCCTCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTC 103422 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || ||| || || ||||||| |||||||||||||| || || |||||||| ||| Sbjct 103423 TTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTG 103482 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 || | |||||| | || ||||| || ||||| || ||| ||||| ||| || Sbjct 103483 ACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTC 103542 Query 125580 CTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT------C 125633 || | ||| | | | | || | | ||||| | ||||||| | Sbjct 103543 CT------CTACTCT---CACCTCAAGAACCGCCCCAGC---AAGCAGGTCATTGAGGAC 103590 Query 125634 AACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC 125693 | ||| || |||||| || | ||| || || ||||| || ||||| | || || | Sbjct 103591 ATCATCGT---CGATGCTGTCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGC 103647 Query 125694 AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGT 125753 || | |||||||||| ||| || ||| ||||||| |||||||| || || || Sbjct 103648 GCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGC 103707 Query 125754 CTACTGTACGAGTTG--ATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATT 125808 || || |||| | ||| |||| | ||||| | || |||||||| | Sbjct 103708 CTCTTG-----GTTGCTCTCGGCAATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACT 103762 Query 125809 TCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||||| | ||| || || | || ||||||||||| || |||||| Sbjct 103763 TCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAG 103809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049510650960