Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq82 176 7e-39
seq268 122 1e-22
>seq82
Length=153332
Score = 176 bits (194), Expect = 7e-39
Identities = 347/508 (68%), Gaps = 4/508 (1%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || ||| | ||| | ||| | || ||||||||||| ||
Sbjct 71744 CAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACGCCGAT 71803
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || ||||| | || ||||||| ||| ||| || |||| || ||| | |||
Sbjct 71804 GTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGAC 71863
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || |||||| | || || | ||||||||| | || | | ||| ||
Sbjct 71864 CTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGAC 71923
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| || | || || ||| |||| |||| ||||| ||||||
Sbjct 71924 TGGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTT 71983
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174
|||||| |||| | |||||||| |||| | || |||| | | | || |
Sbjct 71984 GAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCA-TGAAGGCTC- 72041
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| || ||| | |||||| | ||| ||| |||||||| | || | ||| ||||
Sbjct 72042 AGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCT 72101
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
|||||||| ||| || ||||| |||||||| || | ||||| ||| ||||||
Sbjct 72102 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATCCGCAGCTCCA 72161
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353
| || |||||||| ||| | |||||| | | || || ||| || || ||| ||||
Sbjct 72162 ACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTGCAACCTGG 72221
Query 97354 CATCGGTCAATCTGCCCAAGTTTGTAGA 97381
| ||| || ||||||| ||||| ||
Sbjct 72222 CCTCGCTCGCCCTGCCCACCTTTGTTGA 72249
>seq268
Length=131150
Score = 122 bits (134), Expect = 1e-22
Identities = 309/467 (66%), Gaps = 31/467 (7%)
Strand=Plus/Plus
Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459
|| || ||||| || | |||| | | || || || ||||||||||| ||||| ||||||
Sbjct 103363 GATGAGAAGTCCTCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTC 103422
Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519
|| ||| || || ||||||| |||||||||||||| || || |||||||| |||
Sbjct 103423 TTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTG 103482
Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579
|| | |||||| | || ||||| || ||||| || ||| ||||| ||| ||
Sbjct 103483 ACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTC 103542
Query 125580 CTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT------C 125633
|| | ||| | | | | || | | ||||| | ||||||| |
Sbjct 103543 CT------CTACTCT---CACCTCAAGAACCGCCCCAGC---AAGCAGGTCATTGAGGAC 103590
Query 125634 AACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC 125693
| ||| || |||||| || | ||| || || ||||| || ||||| | || || |
Sbjct 103591 ATCATCGT---CGATGCTGTCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGC 103647
Query 125694 AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGT 125753
|| | |||||||||| ||| || ||| ||||||| |||||||| || || ||
Sbjct 103648 GCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGC 103707
Query 125754 CTACTGTACGAGTTG--ATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATT 125808
|| || |||| | ||| |||| | ||||| | || |||||||| |
Sbjct 103708 CTCTTG-----GTTGCTCTCGGCAATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACT 103762
Query 125809 TCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
||||| | ||| || || | || ||||||||||| || ||||||
Sbjct 103763 TCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAG 103809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741049510650960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |