Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq1020 105 6e-18
>seq1020
Length=182849
Score = 105 bits (116), Expect = 6e-18
Identities = 176/252 (70%), Gaps = 2/252 (1%)
Strand=Plus/Minus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560
||||||||| ||||| ||||| ||||| | | | || || || ||| |||||
Sbjct 12103 ACGCCCGTGCTGCCGAAGCCGCCAGCGCCGCGCACGCTCTCCTCGAGCTCCGCGACCTCG 12044
Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619
| | |||||| | || ||||||| || ||||| || | ||||| |||
Sbjct 12043 ACGATCTCGGGGGT-GAAGATGCGCTCGACGACGAGCTGGGCGACGCGGTCACCCTCGGC 11985
Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679
|||||||| ||| || | || |||||| || | || || | ||||||||||||
Sbjct 11984 GACCTCGAAGTCGGCGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTC 11925
Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739
||||| || || || |||||| ||||||||||| |||| | || || |||||||||||
Sbjct 11924 AGCGTCGATGACACCGGCGCCCGTGTCGATGAAGTTCTTGGCAGCGAGACCGGAGCGGGG 11865
Query 5740 AGCCACGCGGCC 5751
|| | ||||||
Sbjct 11864 GGCAATGCGGCC 11853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430048917612752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |