Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq82 370 3e-97 seq268 91.5 4e-13 >seq82 Length=153332 Score = 370 bits (410), Expect = 3e-97 Identities = 1127/1722 (65%), Gaps = 32/1722 (2%) Strand=Plus/Plus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||||| ||| | |||||||| || |||||||| | || ||||| || Sbjct 71381 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 71440 Query 363514 ATTGAAACATATAAGCTTCTAA-GTGCTCGTGTATTCACGCACGCCACGCCAACAATGTA 363572 || ||||| || || || | | || || | ||||| |||||| | || ||| | | Sbjct 71441 ATCGAAACCTACAACCTGATGTCGAGCAAGT-TCTTCACTCACGCCTCTCCCACACTCTT 71499 Query 363573 CAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGA 363632 ||| || || || | | | | ||| |||| |||||||| || | | |||||||| || Sbjct 71500 CAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGA 71559 Query 363633 TTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGG 363692 || || |||||||||| |||||| || |||| ||| || | || ||||||| || || Sbjct 71560 CTCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGG 71619 Query 363693 CGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACA 363750 || |||||| | | || ||||| | || || || | | || ||| |||||| Sbjct 71620 TGGCATTGGTCTCAACG-TCCACCGCATCCGCGCCACCGG-CTCATATATTGCCGGCACG 71677 Query 363751 GGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTAC 363810 || ||| || || | || || ||||| ||||| || |||| ||||| | ||| Sbjct 71678 AACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTAC 71737 Query 363811 GTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCAT 363870 |||||||||||||| |||||| || || || || || || || |||||| || Sbjct 71738 GTCGACCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCAC 71797 Query 363871 GCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCA 363930 |||||| | || || || | || | || || ||| || || ||||| | || || Sbjct 71798 GCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCC 71857 Query 363931 CGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGT 363990 ||||| || ||| || || ||| || | |||| || |||||| | |||||| | Sbjct 71858 CGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAAT 71917 Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050 | | ||| | ||| | ||||| ||||||| || || || |||| | || || Sbjct 71918 GGGGACTGGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAG 71977 Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCC 364110 || | || || | ||||| ||||| || | ||| |||| ||| ||||| || Sbjct 71978 GAGTTTGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCATGAAG 72037 Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || |||||||| |||| ||||||| | || | |||| ||||| || | |||| ||| Sbjct 72038 GCTCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATG 72097 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| ||| | |||||||||| ||||||| || ||||||| || | || |||| Sbjct 72098 CTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTA-TCCGCAG 72156 Query 364231 -AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 |||||| || || |||||||| || ||| ||| || || ||| || || || || Sbjct 72157 CTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTGCAA 72216 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTTTTGACCACCA 364343 ||| || ||| |||| || || | ||||| || || || | ||| ||| Sbjct 72217 CCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTCTACGACTTCCA 72276 Query 364344 GCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAG 364401 | | || | || || ||| | || | | | |||| || ||| | |||||| Sbjct 72277 GAAGCTCCACGAGGTCACCCAGGTCGTTGTCC--GCAACCTGAACAGAATCATCGACGTC 72334 Query 364402 AATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCGCCCGATTG 364456 || | || || ||| || || || ||| || ||||| || ||||| || | Sbjct 72335 AACCACTACCCTGTTCAGGAGGCTCGCAACAGC-----AACATGCGCCACCGCCCCATCG 72389 Query 364457 GTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGC 364516 |||| ||||| ||||| || ||||| | || || ||| ||| | || || || | Sbjct 72390 GTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGCCCTTCGAGTCTC 72449 Query 364517 CTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTG 364576 | || ||||| | || || ||| ||||||| || || || || || || | || Sbjct 72450 CCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCTCACCA 72509 Query 364577 CTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTT 364635 ||| ||| | |||| || |||| ||| || || ||||| |||||| || Sbjct 72510 TGTCG-GTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTGTT 72568 Query 364636 TCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGG 364695 || ||||| | |||||| ||| | |||||||||| ||| || | | ||| ||||| Sbjct 72569 TCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTGG 72628 Query 364696 GATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCC 364754 ||| | | | | | | ||||| |||| ||| |||||||| || | ||||| Sbjct 72629 GATGCTTTGAAGGAGC-AGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCC 72687 Query 364755 CATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTAC 364814 |||||| || || || | |||||| | || |||||||||||||| || || | || Sbjct 72688 CATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACAC 72747 Query 364815 AAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCT 364874 ||| | || || || |||||| | || || || | ||| || || | || Sbjct 72748 CTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGCT 72807 Query 364875 AGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGC 364934 | |||||||| |||| || |||||| || |||||||||| ||||| || Sbjct 72808 CTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCATCATTGC 72867 Query 364935 CGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAA 364994 || || ||||| | |||||||| || |||| || | ||| | | ||||| Sbjct 72868 CGAGAACGGTTCCATCCAGAACATCCCCAACATTCCTACTGAGGTCAAGGCCCTGTACAA 72927 Query 364995 AACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTT 365054 || || ||||| || || ||| ||| | | | ||||| ||||| || ||||| || Sbjct 72928 GACTGTTTGGGAGATCTCGCAGCGTACTGTTGTGCAGATGGCTGCCGACCGTGGTGCCTT 72987 Query 365055 TATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTAC 365114 ||| ||| |||||| | ||| | ||||| | || ||| | |||| | || Sbjct 72988 CATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGGCAAGATAAC 73047 Query 365115 ATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||||||| ||| ||||| ||| || ||||| || Sbjct 73048 CAGCATGCATTTCGCCGGCTGGAAGCTCGGCCTGAAGACGGG 73089 >seq268 Length=131150 Score = 91.5 bits (100), Expect = 4e-13 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA-ACGT--TCATTCGCGGAACGT 22494 || ||||| || ||||| ||||| ||||| | | |||| | || || ||||| | ||| Sbjct 103330 AAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCGT 103389 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || |||| || || | ||||| || || ||||| || || || | ||||| Sbjct 103390 CTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTC 103449 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || |||| ||||||| ||||| || || || || ||| | || || Sbjct 103450 TGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGT 103509 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643 |||||||||||||| ||||| || || || Sbjct 103510 GATGAGGGTCTTCACACCGACTTCGCCTG 103538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303336132617972