Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq635 136 3e-27
seq620 136 3e-27
seq971 125 5e-24
seq462 89.7 3e-13
>seq635
Length=8191
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 6751 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6692
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 6691 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 6657
>seq620
Length=9278
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 7965 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7906
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 7905 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 7871
>seq971
Length=195693
Score = 125 bits (138), Expect = 5e-24
Identities = 204/294 (69%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253
|||||| ||||| || ||||| ||| | ||| | ||||| ||||||| ||||| ||
Sbjct 119742 GGACGCTTTCTATCGTTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAGGGCAA 119683
Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313
||| || || ||||| | |||||| || || ||| || | |||| || || |
Sbjct 119682 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGCGTTGCTCAGTCCCTCGCCCGTCCCGG 119623
Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
| |||| | || || ||||| | ||| || || || ||||| | |||| | |
Sbjct 119622 CGCCTATGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTTGACCCCGC 119563
Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433
|||| |||| ||| | ||||| || || ||| | ||||||||||||||| || ||
Sbjct 119562 CGACGACCGCTGGATCATCAACGGCTCCCACAACGCCGCCAAGCTGCAGGACCACCTCGA 119503
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
|||||| || ||||||||| || || | | ||| | ||||| ||||||||
Sbjct 119502 CGGCTTCATCAACAAGTTTGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 119449
>seq462
Length=379045
Score = 89.7 bits (98), Expect = 3e-13
Identities = 75/91 (82%), Gaps = 6/91 (7%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956
||||| || |||||||||||| |||||||| ||||||||||| | || ||||||||
Sbjct 299503 AAGCCTGTGCCCTTGGCTGTGATTTCGCTAAATAGTAGATAGAAGCAGTGGGAATCTCGT 299562
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987
| ||| |||| |||||||||||| ||||||
Sbjct 299563 TGGTCCATTCAGGCGCGTCACTAA-TAGATG 299592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334942930051226
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |