Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq268 114 3e-20
seq628 113 9e-20
seq82 107 4e-18
seq736 100 6e-16
seq406 87.8 4e-12
>seq268
Length=131150
Score = 114 bits (126), Expect = 3e-20
Identities = 272/406 (67%), Gaps = 10/406 (2%)
Strand=Plus/Minus
Query 251524 TTCATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCC 251582
||||| ||||| || | | || || || | ||||| || ||||| || | ||||||
Sbjct 103844 TTCATGACACC-GGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCC 103786
Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642
|||| ||||| |||||||||||| |||||||| | | ||||| |||| ||
Sbjct 103785 GCCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATT 103726
Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702
||| || || || |||| |||||| || |||||||| | ||||| |||||| | ||
Sbjct 103725 GCCGAGAGCAACCAAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGA 103666
Query 251703 GTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762
||||||||| | || | ||||| | ||||| | ||| |||| || | ||
Sbjct 103665 GTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGAC 103606
Query 251763 TGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818
|| || | | || ||| | ||||| | | | | | ||||| || | |
Sbjct 103605 AGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGTGAG 103550
Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878
|||| ||||| | | || | ||| |||||||| || ||| ||| | ||||||||
Sbjct 103549 AGTAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGG 103490
Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGAT 251924
| | ||| || ||||| | ||||| ||| |||||||||||||
Sbjct 103489 AGAAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGAT 103444
>seq628
Length=686599
Score = 113 bits (124), Expect = 9e-20
Identities = 440/678 (65%), Gaps = 23/678 (3%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || |||||||| ||||| |||||||||||| |||| || | || ||||| || |
Sbjct 507270 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGTTGGCTCTGGCCCGTGCCATGCTCAAG 507329
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
| ||||| ||||| ||||| || || || ||||||||| |||| ||||| | |||
Sbjct 507330 GGCGCCGACGTCCTGCTGCTCGACGAACCTACCAACCACTTGGATGTTGCCAACATTGCC 507389
Query 279816 TGGCTAGTGTCCTACCT----AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871
||||| | | ||||||| | ||| | | ||| || | | || || |||||
Sbjct 507390 TGGCTCGAGACCTACCTCAAGACCCACCCCG-AGA---TTACCAGTTTGATCGTTTCTCA 507445
Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931
||||||||||||||| || ||| | | |||| ||||| |||| || |||
Sbjct 507446 CGACTCTGGCTTCCTCGACAACGTCACTACCGACATCTACCACTACGAGCCCAACAAGAA 507505
Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCC 279989
||| | ||| ||||||||| | || || ||| ||||| |||||
Sbjct 507506 GCTGGCGTGCTACAAGGGCAACCTGGCCAACTT--TGTCAAGCTCCGCCCCGAGGCCAAG 507563
Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049
|||||| || || || | | ||| | ||||| | || |||| |||
Sbjct 507564 AGCTACTACACGCTCTCGGCTTCCCAGGTCCAGTTCAAGTTCCC-GCCCCCGGGTATCTT 507622
Query 280050 GA-GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCT 280106
|| || ||| || | || || ||||| | | || ||||||||
Sbjct 507623 GACCGGTGTCAAGTCTTTGACCCGTGCCATCATCCGCATGACC--AACGTCTCCTACCAA 507680
Query 280107 TATCCCAATGGCCCCAA-CAT--CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCA 280163
|| ||||| | ||||| | | | | ||| |||| || ||| || || || ||
Sbjct 507681 TACCCCAAGGCTCCCAAGCCTTCCCTGAGCGAGGTCACCTGCCAGCTTACTCTGTCGTCC 507740
Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223
| | | |||| || ||||| ||||| || ||||||||||| ||||| |||| |||
Sbjct 507741 AGAGTAGCCATCATCGGCCCCAACGGTGCTGGCAAGTCTACCCTCATCAAGATCCTTACT 507800
Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTA 280282
|| ||| |||| | ||| | | | ||||||||||||| |||| || | |||
Sbjct 507801 GGTGAGGTTATTCCCAC-CACCGGTAAGGTAGAGAAGCATCCCAACCTGCGTATCGGTTA 507859
Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342
| || ||||||||| || | ||| | |||| || || || | ||| || ||||| ||
Sbjct 507860 CATCAAGCAGCACGCTCTCGAGCACGTTGAGATGCATCTCGAGAAGACGCCCAACCAGTA 507919
Query 280343 CATTCAGTGGCGCTATGC 280360
| | |||||||| || ||
Sbjct 507920 CCTCCAGTGGCGTTACGC 507937
>seq82
Length=153332
Score = 107 bits (118), Expect = 4e-18
Identities = 186/268 (69%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||||| ||| |||| ||||||||||| || ||||| | | | || || | ||
Sbjct 73003 CTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGA 72944
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
||||||||| |||||||||| |||||||| |||| | ||||| | |||||
Sbjct 72943 GATCTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTG 72884
Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293
||| || || | |||||| || |||||||||| | |||||||| || |||| |
Sbjct 72883 GATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATG-T 72825
Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353
| | ||| || | || ||| ||||||||| ||||||||||||| ||| ||||
Sbjct 72824 CGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGAC 72765
Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTC 293381
| ||| ||||| || ||| ||| ||
Sbjct 72764 GCTGGTAGATGTTGGAGGTGTAGGGCTC 72737
>seq736
Length=644843
Score = 100 bits (110), Expect = 6e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| ||||| || || |||| ||||| || || || |||| ||||| ||||| |||
Sbjct 594872 GGCGAGGACCTTTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATCCTGCTCAAC 594813
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| ||||||||||| | || || ||||| ||||||||| || |
Sbjct 594812 CAGACTCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 594753
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| |||||| ||||||||||| |||| ||| | | ||| ||||| | |||
Sbjct 594752 GGCAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 594694
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| | |||||
Sbjct 594693 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 594652
Score = 96.9 bits (106), Expect = 7e-15
Identities = 114/152 (75%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | || |||||| ||||||| | ||||| ||||| |||||||| || || |
Sbjct 593500 CCAACTTCGGCCTGGACGCCGAGTTGGTTTCCCACTCCCGCATGCGCGGTCTGTCCGGTG 593441
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790
| ||| ||||| | ||| | | || ||||| ||||||| |||||| |||||||
Sbjct 593440 GTCAGCGTGTCAAGGTCGTCCTTGCTGCCTGCTCT-TGGCAACGTCCTCACTTGATCGTC 593382
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| ||||||||||||||||| || ||||| ||
Sbjct 593381 CTTGACGAGCCTACCAACTACCTCGACCGTGA 593350
>seq406
Length=827693
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 365342 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 365283
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 365282 CCCACGTCGGGCTCAATTC-CCGTC 365259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027823025059686
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |