Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq356 176 8e-39 seq439 172 1e-37 seq736 138 2e-27 seq268 134 3e-26 seq628 104 4e-17 >seq356 Length=453554 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || ||||| | || | ||| || || ||||| || |||||||| || || || Sbjct 345592 CCTCCACGGAGGCGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 345533 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || || | || |||||||| || Sbjct 345532 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGG 345473 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||||| ||||| || Sbjct 345472 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACC 345413 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || ||||||||||||||||| |||||||| Sbjct 345412 TCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 345366 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | || ||||| ||||| || |||||||| ||||| Sbjct 345820 CCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTC 345761 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || |||||||| || || || || || | || |||||||| ||| Sbjct 345760 AAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGA 345701 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| || || ||||| | || || || Sbjct 345700 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACC 345641 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || ||||| || | |||||||||||| || ||||| Sbjct 345640 TCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 345594 >seq439 Length=70108 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || |||||||| || |||||||| || |||||| Sbjct 3880 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3939 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || ||||| || || Sbjct 3940 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 3999 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 4000 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 4059 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || ||||| |||||||||||||| |||||||| || Sbjct 4060 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGAT 4109 >seq736 Length=644843 Score = 138 bits (152), Expect = 2e-27 Identities = 661/1036 (64%), Gaps = 40/1036 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||||||| ||||||||||||| || || ||| |||||| Sbjct 593863 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 593922 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 593923 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 593982 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || |||||||| |||||||| |||| |||||| ||||| ||||| ||||| Sbjct 593983 ACGAGCTCACCAGTGAGGACGTTGATGAGGGTAGACTTGCCGGCACCGTTGGGACCAATG 594042 Query 225161 ACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG-- 225216 || | || ||||| || | ||| ||| | | || ||| ||||| || Sbjct 594043 ACCGCGATACGGGAGCCGAGAGAGCA--CTGGAAAGAAATGTC-CTG--GATCTGGGGCT 594097 Query 225217 -GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGT 225266 || || |||| |||| || | ||||||| |||||| | Sbjct 594098 TGCTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAG------GATGGCCTTGG 594151 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326 |||||| | | |||||| ||||| |||||||||||||| ||| || | | || Sbjct 594152 CCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGAGAACTCCATCTCGGAGT 594211 Query 225327 CCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTC 225386 | | || |||||||| || || |||| ||| ||||| | |||||| | Sbjct 594212 CGCTGAGCTCGTAGTAGGACTTGGCAGCGGGGTTCTTCTTGACGAACTCCTTCAGGTTAC 594271 Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCG 225445 | ||| | ||||||||| | || |||| || || || ||| | ||| || | Sbjct 594272 CACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACGTTG 594327 Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAG 225504 || |||||| ||||||||||||| || |||||||| | || | | || | | ||| Sbjct 594328 TCGAGGAAGGCAGAGTCGTGGGAGACGATGATGGAAGTGCAGG---GGGAGTTC-TGGAG 594383 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || | |||||| ||||| | ||||||| |||||| || || ||||| ||||| Sbjct 594384 GTACTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGAGAAG 594443 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 |||||| || | | || || || || | || |||||||| ||||| || || Sbjct 594444 CAGGATATCGGGGGCCTCGAAGACAGCACGGCACAAAGCGAGCTTCATCTTCCAACCACC 594503 Query 225625 GGACAGGGAGCCGATTGAAACAGAGTGCTTAGCT-TCGTCAAAGCCGTACTCCAGGAGCG 225683 || |||| ||| | | | | | ||| ||| ||||||| |||| ||| Sbjct 594504 AGAGAGGGCAGAGATCTCACCCTTGACCAT-GCTGTCGGTAAAGCCGAACTCGTTCAGCT 594562 Query 225684 T---CTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGT 225740 | || || | || || || | | | ||| | | | | | | | Sbjct 594563 TGGCCTCGACGTCGGCCTGGGAAGTCTCGACACCAGCATCCTGGAGCTTCTTCATGGTCC 594622 Query 225741 AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCC 225800 | || |||||| || | | ||| | ||||| |||||| || ||| | || ||| Sbjct 594623 ACTCGATGGTGGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAAGACGGTCT 594682 Query 225801 GGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGG 225860 || || || | |||||| ||||| | ||| | || || || || | || | Sbjct 594683 TGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATGAGAG 594742 Query 225861 TACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGA 225920 | |||||| | |||||||||||| || ||||| | | || ||||||| || Sbjct 594743 TGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGACGGA 594802 Query 225921 GGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACA 225980 || | || ||| || ||||||||| |||| |||||||| ||||| ||| | ||| | Sbjct 594803 GGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCAAA 594862 Query 225981 GGTCCTCACCCTCCTC 225996 ||||||| |||||||| Sbjct 594863 GGTCCTCGCCCTCCTC 594878 >seq268 Length=131150 Score = 134 bits (148), Expect = 3e-26 Identities = 321/479 (67%), Gaps = 16/479 (3%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || ||| |||||||||| |||||| Sbjct 103844 TTCATGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCG 103785 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGG 10048 | ||||| ||| |||||||||||||||||||| | | | | | || |||| Sbjct 103784 CCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGT--TGGAAGACTTGTAGAC--CTTGTC 103729 Query 10049 GTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108 | ||||| || || | |||||| || || ||||| |||||||| ||||||||| Sbjct 103728 ATTGCCGAGAGCAACCAAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTT 103669 Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168 ||||||||||| | || ||| || | || ||| | ||| |||| || | Sbjct 103668 GGAGTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTT 103609 Query 10169 GACCGCTTCCTCGACGATG--CTC-TTTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCT 10224 ||| || || ||| |||| ||| | ||| | | ||| | ||||| ||| | Sbjct 103608 GACAGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGT 103553 Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284 || || ||||| | || | ||| || ||||| || || ||| | ||||| Sbjct 103552 GAGAGTAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGT 103493 Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACG 10344 |||| || |||||||||||| || || || || |||||||| |||| | ||| | Sbjct 103492 TGGAGAAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGG 103433 Query 10345 ACCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG 10403 ||| ||| | | |||||| ||| | |||| ||||| |||| ||||||||| Sbjct 103432 CACCGCTGAAGAAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAG 103374 >seq628 Length=686599 Score = 104 bits (114), Expect = 4e-17 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGA---TGGACGACACGTTCGTCAGGCCCTT 225501 ||| ||||||||||||||||| || || || | ||| | || || || ||| Sbjct 507464 GTCGAGGAAGCCAGAGTCGTGAGAAACGATCAAACTGGTAATCTCGGG-GT--GGGTCTT 507408 Query 225502 GAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAG 225561 ||||| || |||||| || | |||| || |||| |||||| ||||||||||| || Sbjct 507407 GAGGTAGGTCTCGAGCCAGGCAATGTTGGCAACATCCAAGTGGTTGGTAGGTTCGTCGAG 507348 Query 225562 AAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCC 225621 ||||||| ||| || | |||| ||||| || | |||| || |||||| ||||| || Sbjct 507347 CAGCAGGACGTCGGCGCCCTTGAGCATGGCACGGGCCAGAGCCAACTTCATCTTCCATCC 507288 Query 225622 CCCGGACAGGGAGCCGA 225638 || ||||| ||||||| Sbjct 507287 ACCAGACAGAGAGCCGA 507271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921610349787120