Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq82 499 6e-136 seq268 237 3e-57 >seq82 Length=153332 Score = 499 bits (552), Expect = 6e-136 Identities = 1200/1787 (67%), Gaps = 79/1787 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || |||||||||| |||| | || || Sbjct 72799 GTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGG 72740 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | || ||| ||||||||| ||||||| ||||| |||||||||||||||| || Sbjct 72739 CTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGAC 72680 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAG---TC 244266 || ||| ||| | || |||||| ||| | |||| ||| ||| | || Sbjct 72679 GAGAAGAGAGTTGCGGACACCGTGC-------TGCTTAATCTG--CTCCTTCAAAGCATC 72629 Query 244267 CCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326 ||| | || |||| ||| | | |||| |||||||||| |||| || | |||| Sbjct 72628 CCA---GTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGATGCCCTG 72572 Query 244327 GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGC 244385 || ||| |||||||| ||| ||||||| || || || |||||||| || | Sbjct 72571 AGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGA 72512 Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT 244445 | || |||||| |||| ||||||||||||||||||| ||||||| | |||||| |||| Sbjct 72511 CATGGT-GAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGCCT 72453 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | | |||||| || | | || |||| | || || || ||||| || |||| Sbjct 72452 CGGGAGACTCGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGA 72393 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 |||||||| | ||| ||| ||||| | || || | || ||||| |||| Sbjct 72392 GACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGA 72333 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 ||||||| | |||| ||||||||| | | || ||| ||| ||| ||| | Sbjct 72332 CGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGA 72273 Query 244626 AGTCGTA--CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 ||||||| ||| ||||| | | || | ||||| | ||||||| Sbjct 72272 AGTCGTAGACTC--------CCTCGTTG-TAGTCA-----ACAAAGGTGGGCAGGGCGAG 72227 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 ||||||||||||||| || ||||| || | | ||||| || |||||| ||||| Sbjct 72226 CGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCA 72167 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 |||||| || ||| ||||| |||| || || ||| |||| |||| ||| || Sbjct 72166 GAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 72107 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 |||||||||||||||||| || |||||| |||||| |||||| | | |||||| Sbjct 72106 CTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAG 72047 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGGG 244922 | | |||||| | ||| ||||| |||||||| ||||| ||||| ||||| || Sbjct 72046 CTTCTGAGCCTTCATGGTCTTGCGACCCTTGCCCATCTGC-TCGTACTTCTCGTACAAGG 71988 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAG 244980 |||| ||||| ||| || ||| | ||||| ||||| || | ||||||||||| Sbjct 71987 CCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTG--GGGCACATGAG 71930 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 | |||| || || | || ||||||| ||||||||||||||| ||||||||||| | Sbjct 71929 AGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAG 71870 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 ||| ||||| | || | ||| ||| ||| |||||| | || ||||| ||||| Sbjct 71869 GAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTC 71810 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 ||||| ||| ||||||| ||||| | ||| | |||| || ||||| ||||||||||| Sbjct 71809 GAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCC 71750 Query 245161 TCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGC 245216 |||||||| | | | ||||| |||||||| || || |||| || | | Sbjct 71749 ACCCTGGTCGA----CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACAC 71694 Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGG 245276 |||| ||| ||||| ||||| || || | ||| || | | || ||| | ||| Sbjct 71693 CGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGC---GCGGATGC-GGTGG 71638 Query 245277 AC----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCT 245332 || | || | || ||||| ||||||||| | |||||| |||||| |||||| Sbjct 71637 ACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCA 71578 Query 245333 GCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGC 245392 || ||||| || |||| |||||||| || || ||||| ||||||||||||| | Sbjct 71577 TAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCC 71518 Query 245393 TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGG 245452 | ||| | | | |||||| || ||||| |||||| || ||| | |||||| | Sbjct 71517 TGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATC 71458 Query 245453 AACCCGTACGTCTGGA-GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCT 245511 | ||| || | || | | || || | || ||| || ||| | |||| | Sbjct 71457 AGGTTGTAGGTTTCGATGACGCGC-TCAACGTCGTCACCCCAGATACCAACGGCGACACG 71399 Query 245512 CATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGA 245568 ||||| |||||||||| ||||| || || || | |||||| | ||| || Sbjct 71398 CATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAG---CTTGAGGAGGTATGA 71342 Query 245569 GCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGC 245628 | ||| | |||||||| || ||||| |||| |||||| || | || ||| Sbjct 71341 TCTCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 71282 Query 245629 TGCGTCGAGTCTC-TCGGCGTGCTTC-TGACTGACCTCGTA--AAACTTTTGCGCT-ATG 245683 | ||| || ||| || |||| || |||| | | ||||| | ||||| | ||| Sbjct 71281 AGAGTCAAG-CTCATCCTTGTGCCTCATGACAG-CGTCGTATGTGTCCTTTGCAATCATG 71224 Query 245684 AGGGGAGCCCTGAGCCCGGTGTCCGGATTGACGTTGAACCAGAGCCTCTTGCACACCTCC 245743 | | ||| || ||| | | || ||||||| | |||| | || || || Sbjct 71223 GGAGACGCCTTG---CCGTTCTTGGGGTTGACGTAGTGGTAGAG---GTCGCTGACAACC 71170 Query 245744 GAGAAC--TTGGGGC-TGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGCCGCCAAC 245800 || || ||| | |||| |||| || ||||||| |||||| || || || |||| Sbjct 71169 GAAGACCATTGCTTCTTGGTTTGCTTGTGGAGGTTGGAGACTGCGATACGAGCAGCCAGG 71110 Query 245801 TTGCTGTAGTCGGGGTGAGTGGTGGTCATGTTGGAGGCCGTGTGGGC 245847 || |||||||||||| ||| |||||||| || || || | ||| Sbjct 71109 ATGGCGTAGTCGGGGTGGGTGACGGTCATGTAGGCAGCAGTTTCGGC 71063 >seq268 Length=131150 Score = 237 bits (262), Expect = 3e-57 Identities = 373/524 (71%), Gaps = 25/524 (5%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 ||||||||| |||||||| |||||||| || || ||||| || | || | | | Sbjct 103318 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATT-AGCGATGAGAAGTCCTC 103376 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| | || | || || ||||| ||||||| ||||| ||||||||| || ||||| Sbjct 103377 CTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT 103436 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 |||||||||||||||||||||| || ||| | |||||||| || |||||||| |||| Sbjct 103437 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCT-TATGCCCGGTCTGACCTTCTCCAACG 103495 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | || ||| | || ||||| || || | ||||| ||||||||||| | ||| | Sbjct 103496 AGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTC---TC 103552 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC---CGGGCCATCATCACGGAGGCCGTGG 42927 |||||| | || |||| | | ||| |||| || ||||||| || || || Sbjct 103553 ACCTCAAGAAC-CGCCCCAGCA--AGCAGGTCATTGAGGACATCATCGTCGATGCTGTCA 103609 Query 42928 AGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACG 42987 |||| ||| |||||||||| || || | ||||| | ||| ||||||||||| | Sbjct 103610 AGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCA 103669 Query 42988 ACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCA 43047 |||| ||| ||||||| ||| || ||||||| ||| | | | | |||| Sbjct 103670 ACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTCTT------GGTTGCTCTCG 103723 Query 43048 GC--CGCC----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGG 43101 || | | ||||||| | | |||||| ||||| |||||||||||||| ||| Sbjct 103724 GCAATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGG 103783 Query 43102 AGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| || |||||||| || |||||||||||| Sbjct 103784 GCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCAG 103827 Score = 141 bits (156), Expect = 2e-28 Identities = 236/337 (70%), Gaps = 13/337 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||||||||||||| Sbjct 102922 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACCTG 102981 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTG---TCT--GAGAACGAAAAGTTTTTCCTCA 42414 ||||||| || |||| | || | || ||| | || |||| ||| || Sbjct 102982 TCCAAGGATCTCCACGACTGGAA--CAATAAGATCAACGAGGATGAGAAGTACTTCATCT 103039 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 |||| || |||||||||||||| ||||||||||| |||||||||||| ||| | Sbjct 103040 CGCACATCCTCGCCTTCTTCGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGTCGAGC 103099 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 | |||| ||||| ||| | ||||| || |||||||| |||||||| || | Sbjct 103100 GCTTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATGA 103159 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATC 42591 | |||||| | ||||| ||| ||| | ||||||| |||| |||||| ||| | Sbjct 103160 TGGAGAACATCCACTCCGAGACCTACTC---GCTGCTCATCGACACCTACATCAAGGAGC 103216 Query 42592 CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | | | |||| | || ||||| ||||| || || Sbjct 103217 CTGCCCAGCGCACGTACCTCTTCAACGCCATTGACAC 103253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944326852764960