Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq268 93.3 9e-14 >seq268 Length=131150 Score = 93.3 bits (102), Expect = 9e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||| | ||| ||| | || ||| || | ||||||||||| | || ||| Sbjct 103619 AGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGA 103678 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 |||||||| || || || ||||||||| | || | || || || |||| || || | Sbjct 103679 AGCAGTACATTGAGTTTGTTGCCGACCGCCTCTTGGTTGCTCTCGGCAATGACAAGGTCT 103738 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 |||| || |||||||||| ||| |||||| ||| || || || || || |||| Sbjct 103739 ACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACT 103798 Query 243710 TCTTCGAAAAGCGTGT 243725 |||| || |||||||| Sbjct 103799 TCTTTGAGAAGCGTGT 103814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102865219340100