Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq268 152 5e-32
seq356 123 2e-23
seq439 118 1e-21
seq836 105 7e-18
>seq268
Length=131150
Score = 152 bits (168), Expect = 5e-32
Identities = 201/277 (73%), Gaps = 5/277 (2%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||||||||| ||| || | || ||||| | ||||||||| |||||| ||
Sbjct 103206 GTAGGTGTCGATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAA 103147
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||| || ||||| || |||||| ||||| || || ||| |||||||||| ||
Sbjct 103146 GCCATAGAAGCAACGGGCCTCGGGGACCTGGACCTCGCCGCTGAAGCGCTCGACCAAGTT 103087
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|| ||||| |||||||| |||||||| ||||| || | |||| |||||| |
Sbjct 103086 CTCATTGACAATGCCGTCAGAAGCGGCGAAGAAGGCGAGGATGTGCGAGATGAAGTACTT 103027
Query 133347 CTCGTTGTCGTTCA----AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
||| | ||||| | | | | ||||||| | |||||||||||||| | |||||
Sbjct 103026 CTCATCCTCGTTGATCTTATTG-TTCCAGTCGTGGAGATCCTTGGACAGGTCAATCTCCT 102968
Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|| ||||||| || || ||||| || || ||||||||
Sbjct 102967 CGGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACAT 102931
>seq356
Length=453554
Score = 123 bits (136), Expect = 2e-23
Identities = 143/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325
|||| ||||| ||||||||| | || |||||| || |||| | | | | | | ||
Sbjct 344876 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTCAAGT 344935
Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
||| |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| || |
Sbjct 344936 CAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATTTTCGCCGGAA 344995
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || |||| |||||||| ||||||||||||||| ||||| | || || |
Sbjct 344996 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTC 345055
Query 38446 ATTTGGTGCTGCG 38458
| ||||| || ||
Sbjct 345056 ACTTGGTTCTCCG 345068
Score = 113 bits (124), Expect = 5e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 38248 AAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA 38307
|| || |||| || ||||| || ||||| ||||||||| | || || ||| | | || |
Sbjct 345142 AACTAGTCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATA 345201
Query 38308 GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGC 38367
| | | | | || ||| || | ||||||||||| |||||| | ||||| ||||
Sbjct 345202 CCATCGACAATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGC 345261
Query 38368 GGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 38427
| | || | ||| ||||| ||||| || |||| || ||||| ||| |||||||| |
Sbjct 345262 GCTTGATCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTC 345321
Query 38428 AAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
| ||||| | || || || ||||||||||||
Sbjct 345322 AGAAGGAGTCCACCCTCCACTTGGTGCTGCGT 345353
Score = 113 bits (124), Expect = 5e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| || || ||| | || ||||| | |
Sbjct 345366 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 345425
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || |||| ||||| ||||| || ||| |||||||
Sbjct 345426 GACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 345484
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||| || || |||||||| || | |||||||| ||||||||
Sbjct 345485 GCAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 345544
Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446
|||||| ||||| | || |||||
Sbjct 345545 CATCCAGAAGGAGTCTACCCTGCA 345568
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || || || || || || | || |||||| | |
Sbjct 345594 ATGCAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCG 345653
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || |||| | || || || | ||||| ||||| ||||| |||||||
Sbjct 345654 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 345712
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || ||| |||| || | |||||| | | || |||||
Sbjct 345713 GCAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAA 345772
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| ||||||| ||| | || || ||| || | || ||
Sbjct 345773 CATCCAGAAGGAGTCGACGCTTCATCTTGTCCTTCGTCTGCGTGGAGG 345820
>seq439
Length=70108
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || ||||| || || |||||| | || || ||| | ||
Sbjct 4106 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 4047
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || ||| | |||||
Sbjct 4046 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3987
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || || || ||||| || |||| ||||||||| ||||||||||
Sbjct 3986 CAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 3927
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || ||||| |||||
Sbjct 3926 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCG 3892
>seq836
Length=245415
Score = 105 bits (116), Expect = 7e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || | |||| |
Sbjct 44461 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 44402
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| ||||||| ||||| |
Sbjct 44401 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 44342
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| |||
Sbjct 44341 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 44282
Query 38433 G 38433
|
Sbjct 44281 G 44281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500166260240640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |