Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq908 342 7e-89
seq294 136 5e-27
seq356 132 6e-26
>seq908
Length=571281
Score = 342 bits (378), Expect = 7e-89
Identities = 727/1081 (67%), Gaps = 16/1081 (1%)
Strand=Plus/Plus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | | ||||||||| ||||| | || ||||| || || ||||||||||||||
Sbjct 526949 TCACCGGACAGGATGGCGGCCTGGACGGCGGCACCGTAGGCAACGGCCTCATCGGGGTTG 527008
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | || || | || || ||||| || || || || | | | || || |||
Sbjct 527009 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGATGCGGGGG 527068
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || || || || ||||||| ||||| || | || | ||| || |||||||| | |
Sbjct 527069 ATACGGGTGGAACCTCCGACCAGGACGATCTCGTGGACCTGCGACTTGTCGATCTTGGCG 527128
Query 7190 TC--TC--GAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAG 7245
|| || || | | | |||| || | || ||||||| |||| |||||
Sbjct 527129 TCAGTCAGGACGCGGT----CGACGGGCTGGATGGTGGAGCGGAACAGGTCCTGGCACAG 527184
Query 7246 TTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATC 7305
||||| || || |||||||| ||||| || ||||| || | ||| ||| | | ||| ||
Sbjct 527185 CTCCTCGAAGCGCGCACGGGTGATGGAGGTGTAGAAGTCGATGCCCTCGAACAGCGAGTC 527244
Query 7306 AATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365
|| || |||| || || || | ||| || | || ||||| || ||||| || || ||
Sbjct 527245 GATCTCGATGGAGGTCTGGGCGGACGAGGACAGGGTGCGCTTGGCACGCTCGCAAGCGGT 527304
Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425
|| | ||| || || || || | ||| ||| | || ||||| || || || || ||
Sbjct 527305 GCGGAGACGGCGCAGCGCGCGGGCGTTGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAA 527364
Query 7426 CTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485
||| | |||||| | ||| | ||||| || |||||||||||||| || ||
Sbjct 527365 CTCGTTGACGAAGTGGTTGACGAGGCGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTC 527424
Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545
|| ||||| | ||||| || ||||| || | |||||| | | | || ||||| ||
Sbjct 527425 ACCAGCGGTGGACTTGACCTCGAAGATGCCCTCCTCAATGGTCAGGAGGGACACATCGAA 527484
Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAG 7605
||||||||||| || || || ||||| ||||| ||| | || ||||| || ||
Sbjct 527485 GGTACCACCACCGAGATCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCCAG 527544
Query 7606 ACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGC 7665
||||||||||| || || || || || || || || || || || ||| ||||| ||
Sbjct 527545 GCCGTACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGC 527604
Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725
||| | || || || || || || || || || ||||| |||||||| ||||| ||
Sbjct 527605 AATGAGACCGGCGTCCTTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACAGT 527664
Query 7726 TACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGT 7785
||||| |||| |||| | |||||| | | || || | || ||| |||
Sbjct 527665 GACGACGGCGTTGTTGACCTGGCCACCGAGGAAAGCCTCGGCAGTCTCGCGCATCTTGAC 527724
Query 7786 AAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAAC 7845
|| ||||| | || ||||| || | || ||| || || || || || || || ||
Sbjct 527725 CAGGACCATGGCCGAGATCTCCTCGGGCGTGAACGTCTTGGTCTCGCCCTTGAACTCGAC 527784
Query 7846 TTCAATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATAT 7904
|| || |||| || || | | | || ||||| ||| | | ||||| |
Sbjct 527785 CTCGATGTTGGGCTT----GCCGTTCTTGTCGACCACCTTGAACGGGAAGTGCTTCATGT 527840
Query 7905 CGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTG 7964
|| | || |||| |||| ||||| | ||||| || ||||| || || || || |
Sbjct 527841 CGGCCTGCACCTCCGGGTCGTTGAACTTGCGCCCGATCAGGCGCTTGGCGTCGAACACCG 527900
Query 7965 TGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTAT 8024
|||| | |||||||| || |||||||| ||||| || ||||| ||||| ||
Sbjct 527901 TGTTGTGCGGGTTCATCGCCACCTGGTTCTTGGCCGCATCGCCGATCAGACGCTC---CG 527957
Query 8025 TTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTT 8084
| ||||| || |||||| | || || || |||| || ||||| ||||| || || ||||
Sbjct 527958 TGTCCGTGAAGGCGACGAAAGACGGTGTGGTTCTGTTTCCTTGATCGTTTGCGATGATTT 528017
Query 8085 C 8085
|
Sbjct 528018 C 528018
>seq294
Length=128585
Score = 136 bits (150), Expect = 5e-27
Identities = 342/516 (66%), Gaps = 13/516 (3%)
Strand=Plus/Minus
Query 7247 TCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
||||| ||||| |||||||| || || || ||| ||| || ||| | | ||
Sbjct 120960 TCCTCGAAACGGGCACGGGTGATCTGGGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 120904
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
|| || |||||||| || || || || | ||| || ||||| || ||||| || |
Sbjct 120903 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 120846
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421
| || || | ||| || || ||||| |||| || || | || ||||| || || |
Sbjct 120845 CGGTACGGAGACGGCGGAGAGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTGCGCT 120786
Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481
|| || | | |||| ||||| | | ||||| || | |||||||||||| |
Sbjct 120785 GGAAGTCCTTCTTGCAGTGGTCCAGGAGGTTGGTGTCGAAGTCCTGACCACCCAAGTGGG 120726
Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541
| || || || || || ||||| |||| ||| || | ||||| | | |||||||
Sbjct 120725 TGTCACCGGCAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 120666
Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598
| || ||||||||||||| ||| | ||||| ||||| || | | | |||
Sbjct 120665 CGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 120606
Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658
| | |||||||| || || || || || || || || || || ||||| || ||| |
Sbjct 120605 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 120546
Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718
||||||| || | | ||||| || || || || || || ||||| |||||||| |
Sbjct 120545 GGCCAGCGATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCGG 120486
Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
|||| || | || || | | || ||||| ||||
Sbjct 120485 GGACGGTGATAACAGCCTTCTCAACCTTCTTGCCGA 120450
>seq356
Length=453554
Score = 132 bits (146), Expect = 6e-26
Identities = 226/327 (69%), Gaps = 3/327 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||||||| || || || || || || ||| || || | |||
Sbjct 198141 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCAGTAGCCAAGACCTCGAAAACACCC 198082
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|| ||| | || |||||||| || ||||||||||| ||||| | | || |
Sbjct 198081 TGGTCGATGGAGAGCAGGGAAACATCGAAGGTACCACCACCAAGGTCGTAGACGATGATC 198022
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
| ||| |||| | |||| || |||||||| |||||||| || || || || ||
Sbjct 198021 TGGCGCTCGCCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCTCG 197965
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| | ||| || || ||| || || ||||| | | ||||| || || || || ||
Sbjct 197964 TTGACAATGCGGAGGACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGGCGC 197905
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| ||||| |||||||| ||||| || || || |||| ||||| ||||| | |||
Sbjct 197904 TGGTTGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCGTGGGTGACCTTCTTGCTGAGG 197845
Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783
|| | || |||| || ||||| |||
Sbjct 197844 TAGGCCTCGGCGACCTCCTTCATCTTG 197818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635124495638640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |