Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq908 342 7e-89 seq294 136 5e-27 seq356 132 6e-26 >seq908 Length=571281 Score = 342 bits (378), Expect = 7e-89 Identities = 727/1081 (67%), Gaps = 16/1081 (1%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||||||||| ||||| | || ||||| || || |||||||||||||| Sbjct 526949 TCACCGGACAGGATGGCGGCCTGGACGGCGGCACCGTAGGCAACGGCCTCATCGGGGTTG 527008 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || || || || | | | || || ||| Sbjct 527009 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGATGCGGGGG 527068 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || ||||||| ||||| || | || | ||| || |||||||| | | Sbjct 527069 ATACGGGTGGAACCTCCGACCAGGACGATCTCGTGGACCTGCGACTTGTCGATCTTGGCG 527128 Query 7190 TC--TC--GAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAG 7245 || || || | | | |||| || | || ||||||| |||| ||||| Sbjct 527129 TCAGTCAGGACGCGGT----CGACGGGCTGGATGGTGGAGCGGAACAGGTCCTGGCACAG 527184 Query 7246 TTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATC 7305 ||||| || || |||||||| ||||| || ||||| || | ||| ||| | | ||| || Sbjct 527185 CTCCTCGAAGCGCGCACGGGTGATGGAGGTGTAGAAGTCGATGCCCTCGAACAGCGAGTC 527244 Query 7306 AATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365 || || |||| || || || | ||| || | || ||||| || ||||| || || || Sbjct 527245 GATCTCGATGGAGGTCTGGGCGGACGAGGACAGGGTGCGCTTGGCACGCTCGCAAGCGGT 527304 Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425 || | ||| || || || || | ||| ||| | || ||||| || || || || || Sbjct 527305 GCGGAGACGGCGCAGCGCGCGGGCGTTGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAA 527364 Query 7426 CTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485 ||| | |||||| | ||| | ||||| || |||||||||||||| || || Sbjct 527365 CTCGTTGACGAAGTGGTTGACGAGGCGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTC 527424 Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545 || ||||| | ||||| || ||||| || | |||||| | | | || ||||| || Sbjct 527425 ACCAGCGGTGGACTTGACCTCGAAGATGCCCTCCTCAATGGTCAGGAGGGACACATCGAA 527484 Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAG 7605 ||||||||||| || || || ||||| ||||| ||| | || ||||| || || Sbjct 527485 GGTACCACCACCGAGATCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCCAG 527544 Query 7606 ACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGC 7665 ||||||||||| || || || || || || || || || || || ||| ||||| || Sbjct 527545 GCCGTACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGC 527604 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||| | || || || || || || || || || ||||| |||||||| ||||| || Sbjct 527605 AATGAGACCGGCGTCCTTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACAGT 527664 Query 7726 TACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGT 7785 ||||| |||| |||| | |||||| | | || || | || ||| ||| Sbjct 527665 GACGACGGCGTTGTTGACCTGGCCACCGAGGAAAGCCTCGGCAGTCTCGCGCATCTTGAC 527724 Query 7786 AAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAAC 7845 || ||||| | || ||||| || | || ||| || || || || || || || || Sbjct 527725 CAGGACCATGGCCGAGATCTCCTCGGGCGTGAACGTCTTGGTCTCGCCCTTGAACTCGAC 527784 Query 7846 TTCAATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATAT 7904 || || |||| || || | | | || ||||| ||| | | ||||| | Sbjct 527785 CTCGATGTTGGGCTT----GCCGTTCTTGTCGACCACCTTGAACGGGAAGTGCTTCATGT 527840 Query 7905 CGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTG 7964 || | || |||| |||| ||||| | ||||| || ||||| || || || || | Sbjct 527841 CGGCCTGCACCTCCGGGTCGTTGAACTTGCGCCCGATCAGGCGCTTGGCGTCGAACACCG 527900 Query 7965 TGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTAT 8024 |||| | |||||||| || |||||||| ||||| || ||||| ||||| || Sbjct 527901 TGTTGTGCGGGTTCATCGCCACCTGGTTCTTGGCCGCATCGCCGATCAGACGCTC---CG 527957 Query 8025 TTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTT 8084 | ||||| || |||||| | || || || |||| || ||||| ||||| || || |||| Sbjct 527958 TGTCCGTGAAGGCGACGAAAGACGGTGTGGTTCTGTTTCCTTGATCGTTTGCGATGATTT 528017 Query 8085 C 8085 | Sbjct 528018 C 528018 >seq294 Length=128585 Score = 136 bits (150), Expect = 5e-27 Identities = 342/516 (66%), Gaps = 13/516 (3%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 ||||| ||||| |||||||| || || || ||| ||| || ||| | | || Sbjct 120960 TCCTCGAAACGGGCACGGGTGATCTGGGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 120904 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| || || || || | ||| || ||||| || ||||| || | Sbjct 120903 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 120846 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | ||| || || ||||| |||| || || | || ||||| || || | Sbjct 120845 CGGTACGGAGACGGCGGAGAGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTGCGCT 120786 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || || | | |||| ||||| | | ||||| || | |||||||||||| | Sbjct 120785 GGAAGTCCTTCTTGCAGTGGTCCAGGAGGTTGGTGTCGAAGTCCTGACCACCCAAGTGGG 120726 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || || ||||| |||| ||| || | ||||| | | ||||||| Sbjct 120725 TGTCACCGGCAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 120666 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598 | || ||||||||||||| ||| | ||||| ||||| || | | | ||| Sbjct 120665 CGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 120606 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| || || || || || || || || || || ||||| || ||| | Sbjct 120605 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 120546 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 ||||||| || | | ||||| || || || || || || ||||| |||||||| | Sbjct 120545 GGCCAGCGATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCGG 120486 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 |||| || | || || | | || ||||| |||| Sbjct 120485 GGACGGTGATAACAGCCTTCTCAACCTTCTTGCCGA 120450 >seq356 Length=453554 Score = 132 bits (146), Expect = 6e-26 Identities = 226/327 (69%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || || ||| || || | ||| Sbjct 198141 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCAGTAGCCAAGACCTCGAAAACACCC 198082 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | || |||||||| || ||||||||||| ||||| | | || | Sbjct 198081 TGGTCGATGGAGAGCAGGGAAACATCGAAGGTACCACCACCAAGGTCGTAGACGATGATC 198022 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | ||| |||| | |||| || |||||||| |||||||| || || || || || Sbjct 198021 TGGCGCTCGCCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCTCG 197965 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | ||| || || ||| || || ||||| | | ||||| || || || || || Sbjct 197964 TTGACAATGCGGAGGACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGGCGC 197905 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || || || |||| ||||| ||||| | ||| Sbjct 197904 TGGTTGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCGTGGGTGACCTTCTTGCTGAGG 197845 Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783 || | || |||| || ||||| ||| Sbjct 197844 TAGGCCTCGGCGACCTCCTTCATCTTG 197818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635124495638640