Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq82 259 6e-64
seq268 143 3e-29
>seq82
Length=153332
Score = 259 bits (286), Expect = 6e-64
Identities = 963/1495 (64%), Gaps = 31/1495 (2%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| ||||| | |||||| || || || |||| ||
Sbjct 71381 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 71440
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| || || ||| || |||||| | | |||| ||||| | || || ||||||
Sbjct 71441 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCTTCACTCACGCCTCTCCCACACTCTTC 71500
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
||||| ||||| || |||| ||||| ||| ||||| | | | ||||||||
Sbjct 71501 AACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGAC 71560
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851
|| || | || || || | ||| |||| || ||| ||||| ||| ||| |||
Sbjct 71561 TCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGT 71620
Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911
|| || || | || |||| || | |||| | || |||| || || ||
Sbjct 71621 GGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAAC 71680
Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971
||| || | ||| | | || ||||| || || || ||| ||| || ||||| ||
Sbjct 71681 GGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTC 71740
Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025
|||| | ||| ||| | | || || |||| | || |||||||| ||||||
Sbjct 71741 GACCAGGGTGGCAACAAGCGCCCC---GGTGCTTTCGCCATTTACCTTGAGCCTTGGCAC 71797
Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085
|| ||| || | || ||| | || ||||| ||||| || | ||||||| || |
Sbjct 71798 GCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCC 71857
Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145
|| || || ||| ||| ||||||||||| || |||||||||||||| || ||| ||| |
Sbjct 71858 CGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAAT 71917
Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204
|| | ||| ||||| | || || || || || || || || |||| | || ||
Sbjct 71918 GGGGACTGGACTCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCCGACTGCTACGGCGA 71976
Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTG 112262
||||||||| ||| | ||| |||||||| | ||| | | | | | || ||| ||
Sbjct 71977 GGAGTTTGAGGCCTTGTACGAGAAGTACGA-GCAGATGGGCAAGGGTC-GCAAGACCATG 72034
Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321
||| | || | | ||| | || || ||| || | || ||||||||||||| || |
Sbjct 72035 AAGGCT-CAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTT 72093
Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381
||||| ||||| || ||| |||| ||||| || || ||||| | || |||
Sbjct 72094 CATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATCCG 72153
Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441
|| ||||||||||| || || || | || | | |||||| ||||| ||
Sbjct 72154 CAGCTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTG 72213
Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATT 112500
||||| || || |||| || |||| | ||| || | || || || | | || |
Sbjct 72214 CAACCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTC-TACGACT 72272
Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560
| || |||||||| || || | || ||||| |||||| | || ||
Sbjct 72273 TCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATCGACG 72332
Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620
|| ||||| ||| || ||||| || || ||| | ||||| || || ||||
Sbjct 72333 TCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATCGGTC 72392
Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCCG 112677
|||||||||| ||||| || |||| ||| | ||| || | | || || ||
Sbjct 72393 TCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGC---CCTTCGAGTCTC 72449
Query 112678 ACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGG 112737
||| || || |||| | || || ||||| || || ||||| || ||
Sbjct 72450 CCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCT---CA 72506
Query 112738 CGAGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794
| | |||| || |||| ||| || || || || | || | |||||||| || |
Sbjct 72507 CCATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTG 72566
Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACT 112854
||| || || | || || | ||| |||||| | | || || | || || ||||
Sbjct 72567 TTTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACT 72626
Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914
|||| ||| | ||||| | || ||| || | ||| | || ||| |||| | | || |
Sbjct 72627 GGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGC 72686
Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974
| ||||| || ||| |||| | || |||||||| || || || |||||||| |||||||
Sbjct 72687 CCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACA 72746
Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATC 113034
| | |||||||| | | | | || || || ||||| | |||||||| |
Sbjct 72747 CCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGC 72806
Query 113035 TCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089
|| || | || ||| || || ||||| |||||| | | |||||| | | |||
Sbjct 72807 TCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCAT 72861
>seq268
Length=131150
Score = 143 bits (158), Expect = 3e-29
Identities = 168/225 (75%), Gaps = 9/225 (4%)
Strand=Plus/Plus
Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 102155
|||||| |||||||| || || | ||||| || || ||||| |||||||| ||
Sbjct 103306 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGC 103362
Query 102156 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 102215
||| ||||| ||||| || |||| ||| | || || || ||||||||||||
Sbjct 103363 GATGAGAAGTCC---TCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATC 103419
Query 102216 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 102275
|||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| |||
Sbjct 103420 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGT 103479
Query 102276 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|| ||||||||||||||| ||||||||||| ||||| || |||
Sbjct 103480 CTGACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCAC 103524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620734283793120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |