Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq356 165 2e-35 seq439 131 4e-25 seq836 107 4e-18 seq82 95.1 3e-14 >seq356 Length=453554 Score = 165 bits (182), Expect = 2e-35 Identities = 164/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| ||||| || ||||| || || || |||||||| |||| || | ||||| || Sbjct 345802 ACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAG-GTGCGACCATCCTC 345744 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||||||| || |||||||| || || ||||| ||||||||||| || ||||| || Sbjct 345743 CAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTG 345684 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||| ||||| ||||||||| || || || || |||| |||||| Sbjct 345683 AATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTT 345624 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || || ||||| | |||||| Sbjct 345623 TCCAGTCAAGGTCTTGACGAAAATTTGCAT 345594 Score = 138 bits (152), Expect = 3e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || ||||| |||||||||| || || | || || || ||||| Sbjct 345341 GTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAAGCTG 345282 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||||||||| | || || ||||| || |||||||| |||||||| ||||| || Sbjct 345281 CTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATCTT 345222 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| || || ||||| || ||| || || |||||||| | ||||| || || Sbjct 345221 TGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCGGT 345162 Query 195117 CAAAGTTTTTACGA 195130 | || || |||| Sbjct 345161 AAGCGTCTTGACGA 345148 >seq439 Length=70108 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || ||||| |||| || || | || || |||||||| Sbjct 3903 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 3962 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || || ||||| || || ||||| || ||||| || || || Sbjct 3963 CTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 4022 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| ||| ||||| |||||||| | ||||| || || Sbjct 4023 GGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGT 4082 Query 195117 CAAAGTTTTTACGAACACTTGCATTTATGGTTACTTG 195153 | || || ||||| | ||||| || |||||| Sbjct 4083 TAGGGTCTTGACGAAGATCTGCATGATTGCCTACTTG 4119 >seq836 Length=245415 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | || || ||||||||||| || |||||||| Sbjct 44283 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 44342 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || || ||||| || || ||||| || ||||| || || || |||||| || || Sbjct 44343 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 44402 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || |||||||| || || |||||||||| ||||| || |||| || || ||||| Sbjct 44403 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 44461 >seq82 Length=153332 Score = 95.1 bits (104), Expect = 3e-14 Identities = 191/281 (68%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646 ||||| |||| |||||| | |||| || ||||||||||| ||| | | |||||||| | Sbjct 71865 TTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGACT 71924 Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706 ||| || | || ||||| ||| ||||| || | || || || ||||| | Sbjct 71925 GGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTTG 71984 Query 160707 AGACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAA 160765 || | | || || | ||||| | ||| ||| | | || | | ||||||| || Sbjct 71985 AGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAA-GACCATGAAGGCTCAG 72043 Query 160766 GAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATAC 160825 | || ||| || |||||| | ||||| |||| |||| ||||| || ||| Sbjct 72044 AAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTAC 72103 Query 160826 AAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866 ||||||||| | |||||||| |||||||||||| |||| Sbjct 72104 AAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGG 72144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109466730866282