Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq298 96.9 3e-15 >seq298 Length=128316 Score = 96.9 bits (106), Expect = 3e-15 Identities = 421/667 (63%), Gaps = 68/667 (10%) Strand=Plus/Plus Query 29776 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 29835 |||||||| | ||| | ||| || |||| || ||||| || |||||| || || Sbjct 44331 CTGGGCTCACGCTCCAACTGCACTTTGAGCGCATCAACGTGGTCAGCGTAGACATGTGCA 44390 Query 29836 TCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29894 || |||| | ||| | ||| || || || | || | || | || ||||||| Sbjct 44391 TCGCCCATGACGTGCGTCAAGCTG-CCAGGGACGAGGTCACATGCGCGGGCAATCATGTG 44449 Query 29895 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 29954 ||| || || | |||||| |||||||| ||||| || ||||| ||||| || | |||| Sbjct 44450 CGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCGAGGCCCATATCGCAGGACCG 44509 Query 29955 CTGGTAGAGCTGACACGAGAG---------------CTCTCCGTC--------------- 29984 |||||| |||||||| || ||||||||| Sbjct 44510 CTGGTACAGCTGACAGTGCAGGTGCCCCTTTGGCTTCTCTCCGTCAGCGGGTGCACCGCG 44569 Query 29985 -GCTC-----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || | ||||| ||||| | ||||| ||||| || || || ||||| Sbjct 44570 GGCCCGCGGGTAGGAGACGTAGAACTGCGCAAACATG---TGGCATGGCGGGAGGGCCAT 44626 Query 30030 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30089 | ||| ||||||||| |||| | || |||||| | ||| | || || | Sbjct 44627 CTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGATTCGT 44686 Query 30090 CCTGAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 30143 | | | || | || ||||| ||||| || || ||| |||| ||| || Sbjct 44687 CTTCAGCTTGTGGATGACCTCGGCG------AGCTGGTCGACGCCCTGGCCCGTGTAATC 44740 Query 30144 TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCC 30203 | | | ||| ||||| || || || || | ||| ||||| ||||| || || || Sbjct 44741 CGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCC 44800 Query 30204 CAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30263 ||||| || |||| | |||| || || |||| | || || | || ||||| Sbjct 44801 GAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGCGAGCCGTT 44860 Query 30264 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGA 30322 | ||||||||||||| || ||| |||| || | |||| |||| ||||| || Sbjct 44861 GCCGTCCCAGATCTTGACGCCCGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GA 44919 Query 30323 CGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAG 30380 |||||||||||||||| | | |||||| | || ||||| | ||| || || ||||| Sbjct 44920 CGAACCACAGCAGCTCAGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTAGTAAGGAG 44977 Query 30381 GGGAAAC 30387 ||| ||| Sbjct 44978 GGGCAAC 44984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408612390891758