Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq356 98.7 8e-16
seq439 87.8 1e-12
>seq356
Length=453554
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622
||| ||||| ||| || || || ||||||||| | | ||| | || ||||||||
Sbjct 345797 ATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTG 345738
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
|||||| ||||| || || ||||| || || | |||| |||||||||||| ||||||
Sbjct 345737 CTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTT 345678
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
|| || | | | || || | ||| ||||| | |||||||| ||||| ||
Sbjct 345677 CGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTTTCCAGT 345618
Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766
||| || || || ||||| |||||
Sbjct 345617 CAAGGTCTTGACGAAAATTTGCAT 345594
>seq439
Length=70108
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||| || || ||| ||| || || || ||||| || || || | ||
Sbjct 3889 AGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 3948
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | |||||| || ||||| ||||| ||||| || || | ||| | |||||||
Sbjct 3949 CCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCC 4008
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||||||||| | ||
Sbjct 4009 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 4068
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || ||||| | || || || || ||||||||
Sbjct 4069 ATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 4106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380932743759858
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |