Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq82 383 3e-101 seq268 154 3e-32 >seq82 Length=153332 Score = 383 bits (424), Expect = 3e-101 Identities = 1066/1607 (66%), Gaps = 96/1607 (6%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||||||||||| ||||| || ||||||||||| ||||| Sbjct 73140 ACGGTGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTC 73081 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTT-TCTTCAGCTTAATATT 212668 ||||| ||| ||||||| | ||||| |||| ||| |||| | || | Sbjct 73080 AGGCCGAGCTT---CCAGCCGGCGAAATGCAT-GCTG---GTTATCTTGCCC---ATGGT 73031 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 | |||| | || || || | ||| || ||||| |||||| ||||| | | Sbjct 73030 CGGGTCCT--TCATG-------TGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACC 72980 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || ||||| | | | | | ||| |||| |||||| || |||||| | | Sbjct 72979 ACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAG 72920 Query 212789 TTCTTTGAGGTCCTCTG--GGAA-GCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGT 212845 | |||| |||| | |||| | |||||||||||| | || || || | | | Sbjct 72919 GGCCTTGA---CCTCAGTAGGAATGTTGGGGATGTTCTGGATGGAACC---GT-TCTCGG 72867 Query 212846 CA--GCTGCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCA 212901 || | ||| | |||| | ||| ||| || ||| || | || ||| | | Sbjct 72866 CAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAGA 72807 Query 212902 GGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAG 212961 | ||||||||| | |||||| ||||| | || || | | |||||| | ||| || | Sbjct 72806 GCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGG 72747 Query 212962 TGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGG 213021 |||||||||| | || ||||||||| |||| ||||| | |||||||| || ||||||| Sbjct 72746 TGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGG 72687 Query 213022 GAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCG---AAGCTCTG 213078 | || || || ||| ||| | || ||||||| || | || || |||| Sbjct 72686 GCGCGACGAGAAGAGAGTTGCGGACACCGTGCT-GCTTAATCTGCTCCTTCAAAGCAT-- 72630 Query 213079 CCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGA 213138 |||||||||| || ||| | ||| || |||||||||||| |||| | || Sbjct 72629 CCCAGTCCCAG---------AGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGA 72579 Query 213139 TGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCT 213198 |||| | || ||| |||| ||| | ||||||||| | |||||||||||||| Sbjct 72578 TGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT 72519 Query 213199 CGCAG-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTC 213257 ||| ||| |||||||||| ||||||||| || || |||| | ||||||| | Sbjct 72518 -GCACCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCG 72460 Query 213258 TTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGG 213317 ||||| || ||| ||||||||| | |||| ||||||| || |||||| Sbjct 72459 CGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGG 72400 Query 213318 ACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTA 213376 || |||| |||||||| | ||| | || ||| ||| |||| ||||| | ||||| Sbjct 72399 ACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTA 72341 Query 213377 AAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAG 213436 |||| ||||||||| |||| ||||||||| | || | |||||| | | || Sbjct 72340 GTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAG 72281 Query 213437 GTACTCGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGAT 213490 | || | || ||||| | || || | ||||| |||||||||| Sbjct 72280 CTTCTGG------AAGTCGTAGACTCCCTCGTTGTAGTCAACAAAGGTGGGCAGGGCGAG 72227 Query 213491 GCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCA 213550 |||||||||||| || || ||||| | || | |||||| || ||||| ||||| Sbjct 72226 CGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCA 72167 Query 213551 CAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATC 213610 |||||| || ||||| ||||| ||||||| ||||| ||| |||||| | ||| Sbjct 72166 GAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 72107 Query 213611 CTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAG 213668 ||||||||||||| ||||| || ||||| ||||| | | || || ||| |||| Sbjct 72106 CTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGAT--GGCATACCAG 72049 Query 213669 AGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAG 213728 || | | ||||| || | || | | | | | |||||||| ||||| Sbjct 72048 AGCTTCTGAGCCTT---CATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTAC 71992 Query 213729 AGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATG 213788 | | | || || | ||| || | |||| || || || ||| |||||| Sbjct 71991 AAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATG 71932 Query 213789 AGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGC 213847 || |||||||||| | | |||| || |||| |||||| ||||| || | ||| || || Sbjct 71931 AGAGTCCAGTCCCCATTCTTCTCC-ACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGC 71873 Query 213848 GGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAA 213907 | ||| ||||| | || | ||| ||| || ||| ||||||| ||| | || Sbjct 71872 GAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAA 71813 Query 213908 GTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG-- 213965 ||| |||| || |||||||| ||||| | ||| ||||| || || || || | |||| Sbjct 71812 GTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTT 71753 Query 213966 -CCGCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCA 214020 || |||||||| || | || | || ||||||||| || || | || || | Sbjct 71752 GCCACCCTGGTCGACG----TAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGA 71697 Query 214021 GCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCA 214080 |||||||| ||||| || || || ||||| ||||||| ||| | || ||| Sbjct 71696 CACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGC---GGATGCGG- 71641 Query 214081 TGGA----GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 |||| ||| || ||||||||||| |||||||||||||||||| Sbjct 71640 TGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 71594 >seq268 Length=131150 Score = 154 bits (170), Expect = 3e-32 Identities = 348/517 (67%), Gaps = 11/517 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | |||||||||||||| ||||| || ||| ||||||||||| Sbjct 103827 CTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 103768 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| |||||||||| | || || ||| ||||| ||| | ||| | Sbjct 103767 CATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCT-TGTCATTGCCGAGAGCAACCAAGA 103709 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || || |||| ||||| | ||| ||| || ||||||||| | || | Sbjct 103708 GGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAG 103649 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||| ||||| || || ||||||| ||| |||| || || || | | || | Sbjct 103648 CGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACGATGATGT 103589 Query 48078 GCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || || | || ||| || | || ||| ||||| | ||||| | ||||| Sbjct 103588 CCTCAATGACCTGCTTGCTGGGGCGGTTCTTG---AGGTGAGAG---TAGAGGAGGCAGG 103535 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| |||| | || || || || ||| ||| ||||||||||| ||||| | Sbjct 103534 CGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGG 103475 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || ||||||||||| || | ||||| | || ||||||||| | Sbjct 103474 GCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATAC 103415 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || ||||| || ||| | || |||| || | |||| || |||| Sbjct 103414 CCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAGGACTTCTCATCGCTAATCC 103355 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 | || |||||||| |||||||| |||||| || Sbjct 103354 ACTTCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGG 103318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931520620208640