Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq82 351 2e-91
seq268 140 6e-28
>seq82
Length=153332
Score = 351 bits (388), Expect = 2e-91
Identities = 894/1334 (67%), Gaps = 55/1334 (4%)
Strand=Plus/Minus
Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAA-GACTGCGTCAGGGC 221424
|| ||||||| || |||||| || | | | |||| | ||| ||| || |||||
Sbjct 72558 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGC 72500
Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGA 221483
|||||||||||||||||| |||||| |||||||||| || | ||||||||||| ||
Sbjct 72499 AGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGG-TCGCGAGCCTCGGGAGACTCGA 72441
Query 221484 AGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543
|||||||||| || | | ||| | || || || ||||| || |||| ||||||||| |
Sbjct 72440 AGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGGGGC 72381
Query 221544 TGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601
||| | | ||||| | ||| | || ||| || || || |||||||||||| |
Sbjct 72380 GGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGA-ACAGGGTAGTGGTTGACGTCGAT--G 72325
Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661
||| | |||||| || ||| ||| |||| ||| | || ||| | || |
Sbjct 72324 ATTCT----GTTCAGGTTGCGGAC---AACGACCTGGGTGACCTCGTGGAGCTT---CTG 72275
Query 221662 CAACTCGCCG---CCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718
|| ||| | || |||| | | || ||||| | | ||||| | ||||||
Sbjct 72274 GAAGTCGTAGACTCCCTCGTTGTAG---TCAACAAAGGTGGGCAGGGCGAGCGAGGCCAG 72218
Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778
||| || || || ||||| || | |||| || ||||| || |||||||||
Sbjct 72217 GTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTGGA 72158
Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838
|| ||| || || |||| || || || |||||| ||||| || |||||||||||
Sbjct 72157 GCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAG 72098
Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897
||| ||||| |||||||| ||| ||| | || || | |||||| | |||| |
Sbjct 72097 CATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCT-TCTGAG 72039
Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATAC--CCGGTATAGAGCAT 221952
| ||| ||| ||| ||||| | ||| || ||| | ||| | || |
Sbjct 72038 CCTTCATGGTC---TTGCG---ACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCT 71985
Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012
|||||| || ||||| ||| ||||||| || || | ||| ||||| ||| |
Sbjct 71984 --CAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGT 71927
Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072
||||| | || | | ||||||| |||||||||||| || ||||| || || | ||
Sbjct 71926 CCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAA 71867
Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132
|| || | || || ||||||| ||||| ||| || | || |||||| || || ||
Sbjct 71866 AAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAA 71807
Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192
| || |||||||| ||||| || || | ||| | ||| ||||| ||||||||||||||
Sbjct 71806 GACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 71747
Query 222193 CTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251
||| || | | | ||| | |||||||| || || | || || | |||||||
Sbjct 71746 CTGGTCGA-CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGG 71688
Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC---- 222307
| |||||| ||||| ||| || | ||| ||| | || | | || |||
Sbjct 71687 AGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGC---GGATGC-GGTGGACGTTG 71632
Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367
| || || |||||||| || |||||||||||||| ||||||| ||||| |||
Sbjct 71631 AGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATA 71572
Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTG 222427
||||| |||||||||||||| | || | || || ||||| |||| ||| | | | |
Sbjct 71571 CCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGG 71512
Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487
| || |||||| || || |||||| |||||| || ||| | || |||||||| | |
Sbjct 71511 GTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTG 71452
Query 222488 TACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTAC 222547
|| || || | ||| | | | || ||| || || | |||| | |||| |
Sbjct 71451 TAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATC 71392
Query 222548 ATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605
|||| |||||| ||||| || || | |||| ||| ||||| ||| | ||||
Sbjct 71391 ATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCT--TGAGGAGGTATGATCTCTCCA 71334
Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCA 222665
||||||||| || ||||| | | || ||||| | | | | || | ||| | ||| |
Sbjct 71333 AAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTCAA 71274
Query 222666 GCTCCGACTTGTGC 222679
|||| |||||||
Sbjct 71273 GCTCATCCTTGTGC 71260
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || | | |||||| | ||| || ||| | ||
Sbjct 72799 GTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGG 72740
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|| | || |||||||||||||| |||||| | |||||||| || |||||||| || ||
Sbjct 72739 CTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGAC 72680
Query 221236 CAGCAGACTGTTGCG 221250
|| ||| ||||||
Sbjct 72679 GAGAAGAGAGTTGCG 72665
>seq268
Length=131150
Score = 140 bits (154), Expect = 6e-28
Identities = 343/521 (66%), Gaps = 21/521 (4%)
Strand=Plus/Plus
Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869
||| ||||| | |||||| |||||| |||||||||| | | ||| | |
Sbjct 103318 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCC 103377
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929
|| | | |||| || || ||||| || || || ||||| ||||| ||||||||| | ||
Sbjct 103378 TTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC 103437
Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989
|| ||||||||||||||||| || || |||||||| ||| ||| |||||||||
Sbjct 103438 GCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAG 103497
Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049
|| ||| | || |||||||| |||| || || |||||||| |||||| | |||
Sbjct 103498 CTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTC---TCAC 103554
Query 26050 TTGCTCCACAA--ACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106
||| | || || |||| || | | | |||||| || ||||| ||
Sbjct 103555 ---CTCAAGAACCGCCCCAGCAAGCAGGTCATTGAGGACATCATCGTCGATGCTGTCAAG 103611
Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166
|| ||| ||||||| | | ||||||||| ||
Sbjct 103612 ATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAAC 103671
Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCC 26226
|| |||| || |||||||||| ||| ||||||| || || || ||| |||| |
Sbjct 103672 CTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCT-CT-TGGTTGCT----CTCGGC 103725
Query 26227 A--GAC----TCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAA 26280
| ||| |||||| | | ||||| || ||||| ||||| ||||| || |||
Sbjct 103726 AATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGC 103785
Query 26281 GGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|| ||||||||||||||||| ||| | || | |||||| ||
Sbjct 103786 GGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCA 103826
Score = 89.7 bits (98), Expect = 1e-12
Identities = 161/233 (69%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| ||||||||||||||||| | ||| |||||||||||| |||||||| |||
Sbjct 102922 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACCTG 102981
Query 25537 GCCAAGGACATGGACGGCTGGTACGCT-CTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593
||||||| | ||| |||| || | ||| | | || ||| || | || || |
Sbjct 102982 TCCAAGGATCTCCACGACTGGAACAATAAGATCAACGAGGATGAGAAGTACTTCATCTCG 103041
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || ||||| || || ||||| || || || || ||||| || |||| |
Sbjct 103042 CACATCCTCGCCTTCTTCGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGTCGAGCGC 103101
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||| | | || || ||| | |||||| || ||||| || ||||| ||
Sbjct 103102 TTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 103154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928832655354240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |