Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq955 266 8e-67 >seq955 Length=418 Score = 266 bits (294), Expect = 8e-67 Identities = 253/321 (79%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 4805 TCCTGAACCCGCGGGACTGGCACAACATCGCGCTGCTGAAAGACAATGAAGGCCGCTATA 4864 ||||||||||||| ||||||||| |||||| ||||| ||||| || || |||||| Sbjct 407 TCCTGAACCCGCGTGACTGGCACGCCATCGCACTGCTAAAAGATTCGGATGGTCGCTATC 348 Query 4865 TCTTCGGTGGTCCTCAGGCGTTTACCAGCAACA-TCATGTGGGGCCTGCCAGTGGTTCCG 4923 | |||||||| || |||||| || |||| | |||||||||||||||| || || | Sbjct 347 TGTTCGGTGGCCCGGCGGCGTTCGCC-GCAAAAGTCATGTGGGGCCTGCCGGTTGTGGCC 289 Query 4924 ACTAAGGCGCAGGCCGCCGGCACCTTTACGGTGGGCGGTTTCGATATGGCCTCTCAGGTC 4983 || ||||| ||||| |||||||| || || ||||||||||| |||| || ||| || Sbjct 288 ACCAAGGCCCAGGCGCAAGGCACCTTCACCGTCGGCGGTTTCGACCTGGCATCGCAGATC 229 Query 4984 TGGGATCGCATGAATGCCACCGTGGAAGTCAGCCGTGACGACCGCGACAACTTCGTGAAA 5043 ||||| |||||| | || ||| | || ||||| | | || ||||||||||||||||| Sbjct 228 TGGGACCGCATGGACGCGACCATCGAGATCAGCAATCAGGATCGCGACAACTTCGTGAAG 169 Query 5044 AACATGCTGACCATTCTGTGCGAAGAGCGCCTGGCGCTGGCGCACTATCGCCCGGCGGCC 5103 |||||||||||||| ||||| |||||||| |||||| || | ||||| || ||| | || Sbjct 168 AACATGCTGACCATCCTGTGTGAAGAGCGTCTGGCGGTGACCCACTACCGTCCGACCGCG 109 Query 5104 ATCATCAAGGGCACTTTCTCT 5124 || ||||||||||||||| || Sbjct 108 ATGATCAAGGGCACTTTCACT 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127969610437732