Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq955 266 8e-67 >seq955 Length=418 Score = 266 bits (294), Expect = 8e-67 Identities = 253/321 (79%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 13441 AGAGAAACTGCCCTTGATGATTGCCGTCGGGCGATAGTGCGCCAGCGCCAGGCGCTCTTC 13500 || |||| |||||||||| || || ||||| || ||||| | || |||||| |||||||| Sbjct 88 AGTGAAAGTGCCCTTGATCATCGCGGTCGGACGGTAGTGGGTCACCGCCAGACGCTCTTC 147 Query 13501 ACACAGGATTGTCAGCATGTTTTTCACGAAGTTATCGCGGTCTTCACGGCTGACTTCCAC 13560 ||||||||| ||||||||||| ||||||||||| ||||| || | | ||||| || | Sbjct 148 ACACAGGATGGTCAGCATGTTCTTCACGAAGTTGTCGCGATCCTGATTGCTGATCTCGAT 207 Query 13561 GGTGGCATCCATGCGATCCCACACCTGCGAGGCCATATCAAAACCGCCCACCGTAAAGGT 13620 ||| || |||||||| ||||| | |||||| |||| || |||||||| || || ||||| Sbjct 208 GGTCGCGTCCATGCGGTCCCAGATCTGCGATGCCAGGTCGAAACCGCCGACGGTGAAGGT 267 Query 13621 GCCAGCGGCCTGCGCCTTAGTCGGAACCACTGGCAGGCCCCACATGA-TGTTGCTGGTAA 13679 ||| ||||| ||||| || | || || |||||||||||||||| | |||| || | Sbjct 268 GCCTTGCGCCTGGGCCTTGGTGGCCACAACCGGCAGGCCCCACATGACTTTTGC-GGCGA 326 Query 13680 ACGCCTGAGGACCACCGAAGATATAGCGGCCTTCGTTGTCTTTCAGCAGCGCGATGTTGT 13739 ||||| || |||||||| | |||||| || || ||||| ||||| |||||| || Sbjct 327 ACGCCGCCGGGCCACCGAACAGATAGCGACCATCCGAATCTTTTAGCAGTGCGATGGCGT 386 Query 13740 GCCAGTCGCGCGGGTTCAGGA 13760 ||||||| ||||||||||||| Sbjct 387 GCCAGTCACGCGGGTTCAGGA 407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124715250861448