Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq357 134 4e-26
seq268 95.1 4e-14
seq569 91.5 4e-13
seq16 86.0 2e-11
>seq357
Length=116144
Score = 134 bits (148), Expect = 4e-26
Identities = 191/264 (72%), Gaps = 6/264 (2%)
Strand=Plus/Plus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||||||||| || ||||||||| | || || ||||| ||||| || |
Sbjct 7827 CTTGACGAGACGACGCTGGATGTAACCAGTTTCGGCAGTCTTGACAGCAGTATCGATCAA 7886
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701
||| | |||||| |||| ||||||||||| | || | || ||| || || | |
Sbjct 7887 ACCCTCTCGACCAGCCATGGCATGGAAGAAGAATTC-ACTGGGCGTAAGACCACGGAGGT 7945
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
||||| |||||||||| || || |||||||| || | |||| |||||| || || || |
Sbjct 7946 AGGAGTTCTCAACGAAGCCGCGAGCCTCGGGAGAGTAGTCGTCCTTGGTGAAATGCGGGA 8005
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821
| || | | || ||||| | || |||||||| || || ||| |||||||||| | |
Sbjct 8006 GAGTGCGATACTTGAAGCCGAAGGGAATACGCTTACCCTCGACGATCTGCTGTCC--GAC 8063
Query 302822 ACGA--AATCATCTGCGAAATATT 302843
| || | ||||||| ||||| ||
Sbjct 8064 AAGAGCAGTCATCTGGGAAATGTT 8087
>seq268
Length=131150
Score = 95.1 bits (104), Expect = 4e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 133508 CGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATT 133567
||||||||||| || || | || ||||| || || ||||| ||||| ||| ||| ||
Sbjct 103387 CGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 103446
Query 133568 TTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCA 133627
|| ||||| || ||||||||| || | || || ||| || || ||||| || || ||
Sbjct 103447 TTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCT 103506
Query 133628 AGGGACGAGGCACTTCACACCGAATTTGCC 133657
| || |||| ||||||||||| || |||
Sbjct 103507 CGTGATGAGGGTCTTCACACCGACTTCGCC 103536
>seq569
Length=19825
Score = 91.5 bits (100), Expect = 4e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||| | |||||| |||||||||||||| ||||||||||| |||||||| || ||
Sbjct 5575 GCACCGTGGGCAATCATGCAATCACGCTCCATCTCACCGAAACGCAGACCACCGTCACGG 5516
Query 251545 GCCCTACCCTCGGCAGGCTG 251564
|| | ||||||| | |||||
Sbjct 5515 GCACGACCCTCGACGGGCTG 5496
>seq16
Length=170204
Score = 86.0 bits (94), Expect = 2e-11
Identities = 118/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556
|||| |||||| |||||||| || || |||||||||||||| ||||| | | ||| ||
Sbjct 102400 ATCAAACAATCGCGCTCCATCTCGCCCAAACGAAGACCACCGTCGCGGGATCGACCTTCC 102341
Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616
| ||||| || |||||| | || | ||||| ||| || || ||| || |
Sbjct 102340 GTCGGCTGGCGGGTGAGAATGGCCCTGGGACCCCGGGAACGAGAGTGCATCTTGTCCTGA 102281
Query 251617 ACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661
||||| ||||| || |||||||| | ||| ||| |||| |||
Sbjct 102280 ACCATGTGCTTCAGGCGCTGGTAATAGATGGGCCCGTTGAAAATG 102236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471797874884502
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |