Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq357 134 4e-26 seq268 95.1 4e-14 seq569 91.5 4e-13 seq16 86.0 2e-11 >seq357 Length=116144 Score = 134 bits (148), Expect = 4e-26 Identities = 191/264 (72%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| || ||||||||| | || || ||||| ||||| || | Sbjct 7827 CTTGACGAGACGACGCTGGATGTAACCAGTTTCGGCAGTCTTGACAGCAGTATCGATCAA 7886 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| | |||||| |||| ||||||||||| | || | || ||| || || | | Sbjct 7887 ACCCTCTCGACCAGCCATGGCATGGAAGAAGAATTC-ACTGGGCGTAAGACCACGGAGGT 7945 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 ||||| |||||||||| || || |||||||| || | |||| |||||| || || || | Sbjct 7946 AGGAGTTCTCAACGAAGCCGCGAGCCTCGGGAGAGTAGTCGTCCTTGGTGAAATGCGGGA 8005 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || | | || ||||| | || |||||||| || || ||| |||||||||| | | Sbjct 8006 GAGTGCGATACTTGAAGCCGAAGGGAATACGCTTACCCTCGACGATCTGCTGTCC--GAC 8063 Query 302822 ACGA--AATCATCTGCGAAATATT 302843 | || | ||||||| ||||| || Sbjct 8064 AAGAGCAGTCATCTGGGAAATGTT 8087 >seq268 Length=131150 Score = 95.1 bits (104), Expect = 4e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 133508 CGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATT 133567 ||||||||||| || || | || ||||| || || ||||| ||||| ||| ||| || Sbjct 103387 CGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 103446 Query 133568 TTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCA 133627 || ||||| || ||||||||| || | || || ||| || || ||||| || || || Sbjct 103447 TTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCT 103506 Query 133628 AGGGACGAGGCACTTCACACCGAATTTGCC 133657 | || |||| ||||||||||| || ||| Sbjct 103507 CGTGATGAGGGTCTTCACACCGACTTCGCC 103536 >seq569 Length=19825 Score = 91.5 bits (100), Expect = 4e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | |||||| |||||||||||||| ||||||||||| |||||||| || || Sbjct 5575 GCACCGTGGGCAATCATGCAATCACGCTCCATCTCACCGAAACGCAGACCACCGTCACGG 5516 Query 251545 GCCCTACCCTCGGCAGGCTG 251564 || | ||||||| | ||||| Sbjct 5515 GCACGACCCTCGACGGGCTG 5496 >seq16 Length=170204 Score = 86.0 bits (94), Expect = 2e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556 |||| |||||| |||||||| || || |||||||||||||| ||||| | | ||| || Sbjct 102400 ATCAAACAATCGCGCTCCATCTCGCCCAAACGAAGACCACCGTCGCGGGATCGACCTTCC 102341 Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616 | ||||| || |||||| | || | ||||| ||| || || ||| || | Sbjct 102340 GTCGGCTGGCGGGTGAGAATGGCCCTGGGACCCCGGGAACGAGAGTGCATCTTGTCCTGA 102281 Query 251617 ACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 ||||| ||||| || |||||||| | ||| ||| |||| ||| Sbjct 102280 ACCATGTGCTTCAGGCGCTGGTAATAGATGGGCCCGTTGAAAATG 102236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471797874884502