Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq366 233 2e-55 seq82 190 2e-42 seq807 152 6e-31 seq516 134 2e-25 seq268 129 7e-24 >seq366 Length=112788 Score = 233 bits (258), Expect = 2e-55 Identities = 285/389 (73%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||||||| |||| |||| ||||| ||||| ||||| | Sbjct 43386 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 43445 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 || ||||||||||||||||||| ||| || | || ||||| || |||||| || | | Sbjct 43446 CTCACCGAGGCCGACATCCAGCCCCAGCTGAACCGCCGCCGTCCCGGCCAGAGCTCCATC 43505 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | || ||||| ||||| ||||||||| |||| ||| ||||| ||| |||| || Sbjct 43506 ACGACCCCGCGAAACGAAAAGGATCGCGTCGTCATTCAGAGCGGCACCGAGTTCGGCGTC 43565 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337 || |||||| | || ||||| | | || ||| |||||||| ||| |||| Sbjct 43566 ACCCTCGGCACCCCGATCGGCATGCTCGTCCAGAACGAGGACCAGCGCCCCAAGGACTAC 43625 Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | ||| |||| || | | || || ||||| |||||||||| |||||| | | Sbjct 43626 GGCAACTCCACCATGGACATGTTCCCCCGCCCCTCCCACGCCGACTGGACCTACCTCGAG 43685 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 |||||||| ||||||| || |||||||| ||||| || || |||||||||||| || Sbjct 43686 AAGTACGGAGTCAAGGCCTCCTCGGGCGGTGGCCGCTCCTCCGCCCGCGAGACCATCGCC 43745 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 ||||| ||||||||||| |||||||||| Sbjct 43746 CGCGTTGCCGCCGGCGCCCTCGCCGAGAA 43774 Score = 140 bits (154), Expect = 4e-27 Identities = 129/161 (80%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 ||||||||||| |||||||| || || ||||| ||||||| ||| | | ||||||| Sbjct 44007 GAGGACAGCATTGGCGGCACTGTCACCTGCGTCATTCGCAACCCGCCCTCCGCCCTCGGC 44066 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| |||||||| ||||||||| |||||||| ||||| ||| Sbjct 44067 GAGCCCTGCTTCGACAAGCTCGAGGCCCAGCTCGCCCATGCCATGCTCAGCATCCCCGCC 44126 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT--GCGGGTGCG 19202 |||||||| |||||||| ||| |||| || |||| |||| Sbjct 44127 ACCAAGGGCTTCGAGATCGGC-TCGGGCTTCGGCGGCTGCG 44166 >seq82 Length=153332 Score = 190 bits (210), Expect = 2e-42 Identities = 338/495 (68%), Gaps = 15/495 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| ||||| |||||||| || |||| |||||||| Sbjct 71746 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGA 71687 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| || | || | ||||| |||||| | ||| || | || Sbjct 71686 GGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACC 71627 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| |||||| ||||||||| | ||||| ||||| ||||| ||||| ||||| Sbjct 71626 AATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTC 71567 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||||| |||||||||| ||||| ||||| || || || | || | || || Sbjct 71566 AATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACC 71507 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||||||| ||||| | || ||||| |||| | |||||| || |||||| Sbjct 71506 GGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGT 71447 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| |||||| || |||||| || || || || | |||||| Sbjct 71446 TTCGATGACGCGC------------TCAACGTCGTCA---CCCCAGATACCAACGGCGAC 71402 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| | |||| | | |||| | |||| ||||| || Sbjct 71401 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGA 71342 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 | || ||| ||| ||| ||||| || || |||||||| | | |||||| Sbjct 71341 TCTCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 71282 Query 1630545 GGCGTCGAGGGCATC 1630559 | ||| || |||| Sbjct 71281 AGAGTCAAGCTCATC 71267 Score = 95.1 bits (104), Expect = 1e-13 Identities = 318/501 (63%), Gaps = 2/501 (0%) Strand=Plus/Minus Query 1628101 ACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAA 1628160 ||||| |||||||||| | || |||||||| || || || |||| | Sbjct 72246 ACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAG 72187 Query 1628161 AACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTT 1628219 ||| || ||||| ||||| ||||||| | | | | || || ||||||| |||||| Sbjct 72186 TACTCGATAATCTCCGTGCAGAGGTTGGA-GCTGCGGATAGTGCCAAGGTTCTTCTGGTT 72128 Query 1628220 GGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGC 1628279 | | | ||||| |||| ||||||| ||||||| |||| || |||||| |||| || Sbjct 72127 GCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGC 72068 Query 1628280 CGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNN 1628339 | ||| |||||| |||||| || | || || | | || | |||| Sbjct 72067 CTCGAGGATGGCATACCAGAGCTTCTGAGCCTTCATGGTCTTGCGACCCTTGCCCATCTG 72008 Query 1628340 NNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGC 1628399 ||||| || |||||||||| ||| |||||| || Sbjct 72007 CTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCA 71948 Query 1628400 CTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTC 1628459 ||| || || | ||| | |||||| ||| || || | | ||| |||||||| Sbjct 71947 TTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTC 71888 Query 1628460 ACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 1628519 |||| || ||| || ||||| || || || ||||||||||||||||||||| Sbjct 71887 GGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTT 71828 Query 1628520 TTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 1628579 | || | |||||| | ||||||||||| ||||| ||||| ||| || || Sbjct 71827 GCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGC 71768 Query 1628580 GCCCTTGCGCTTGCCGCCGCC 1628600 || ||||||| ||| || Sbjct 71767 ACCGGGGCGCTTGTTGCCACC 71747 Score = 93.3 bits (102), Expect = 5e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929 || || || ||||| || |||| || || || |||||||||| ||| || ||| ||| Sbjct 72414 TCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 72355 Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989 || | || ||||||||||||| |||||| | | ||| ||||||| || ||||||||| Sbjct 72354 TCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGG 72295 Query 1627990 ACGATCTCGTGCAG 1628003 || |||||| || Sbjct 72294 GTGACCTCGTGGAG 72281 Score = 89.7 bits (98), Expect = 6e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393 ||||||| || || || || | || || || ||| |||||||||| |||| | Sbjct 72800 GGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGG 72741 Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453 ||| | |||| ||||||||| ||||||||| || |||| || |||||| |||| | Sbjct 72740 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGA 72681 Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTGTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCC 1627513 |||| || |||||||| | |||||||| || || | || || |||||||||| Sbjct 72680 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCC 72621 Query 1627514 AG 1627515 || Sbjct 72620 AG 72619 >seq807 Length=252552 Score = 152 bits (168), Expect = 6e-31 Identities = 99/109 (91%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||||||||||||||||||||| || |||||| |||| |||||| | || |||||| Sbjct 194091 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTTGGTTGCAAGACCGTCGCCAAC 194150 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 194151 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 194199 >seq516 Length=33685 Score = 134 bits (148), Expect = 2e-25 Identities = 259/373 (69%), Gaps = 18/373 (5%) Strand=Plus/Plus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||||||||||| | |||||||| || || |||| | | | ||||||||||||||||||| Sbjct 24648 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 24706 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || || | ||||||||| | |||| |||||| |||| Sbjct 24707 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCGGTGGTGC 24766 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCC---AAATAAGGGGCCACCAGA-GGA 1726867 | ||||| | |||||| | | | ||| ||| || | |||| ||| || Sbjct 24767 GGGCGCCGATGGCGCCGACGGAGATGAAGTCGGCCAGGAACTGCGGGG-----AGATGGT 24821 Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926 | ||| | |||| ||| | |||| || | ||||| || || ||||| || || | Sbjct 24822 GTCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGCGGTCAGGTCGCGGAAGAGCTG 24878 Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986 ||| || |||||| | | | | | | ||||| ||| |||||| || Sbjct 24879 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGAT 24938 Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046 ||||||||||| |||||||| ||||| ||||| |||| ||||||||||||| ||||| Sbjct 24939 GAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 24998 Query 1727047 AAGCGCGTCGCCG 1727059 || ||||||| Sbjct 24999 GAG---GTCGCCG 25008 >seq268 Length=131150 Score = 129 bits (142), Expect = 7e-24 Identities = 176/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| ||| || |||||||||||||| | || ||||| Sbjct 103832 GCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATG 103773 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || ||||||| | ||||||| ||| || ||||| | | Sbjct 103772 TTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATTGCCGAGAGCAACC 103713 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT- 868869 | ||||||||||| |||||||| |||||||| ||| ||| || ||||||||||| Sbjct 103712 AAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGC 103653 Query 868870 -GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 |||||| | ||||| | |||| ||| ||||| | ||| |||| ||| || ||||||| Sbjct 103652 AGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACGA 103595 Query 868929 TGAT 868932 |||| Sbjct 103594 TGAT 103591 Score = 113 bits (124), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||||| |||||| |||| || |||||||| || || ||||| Sbjct 103518 ACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 103459 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | ||| || ||| ||||| ||||| |||||||| || Sbjct 103458 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAA 103399 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATCGCC 869356 | | | ||| |||| ||| ||| |||| | ||| | | | |||||||||| ||| Sbjct 103398 GGCAACGAGACGCTGGGCGAAG-----GAGGACTTCTCATCGCTAATCCACTTCAGGGCC 103344 Query 869357 CAGTCGGCCTTTTT 869370 ||||||||||| || Sbjct 103343 CAGTCGGCCTTCTT 103330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107053360341582