Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq82 116 3e-21
seq439 107 2e-18
seq356 98.7 9e-16
>seq82
Length=153332
Score = 116 bits (128), Expect = 3e-21
Identities = 385/592 (65%), Gaps = 24/592 (4%)
Strand=Plus/Minus
Query 138424 CCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAG 138483
||||| | ||||||||||| || ||||| ||||| ||||| || | || |
Sbjct 72876 CCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGA 72817
Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543
|| || | || | ||| | ||||| || ||||| || | || ||||| |||
Sbjct 72816 TCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAG 72757
Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603
|||||| |||| | |||||||| | |||||||| |||| ||||| | ||| | ||
Sbjct 72756 ATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCA 72697
Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTG 138663
||||||||| ||| || | |||||| || || | |||||| |||| || | |||||
Sbjct 72696 GTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTC 72637
Query 138664 AGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATT 138723
| | ||||||||| | ||| || || |||||||| || ||||| | ||
Sbjct 72636 AAAGCATCCCAGTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGATG 72577
Query 138724 CCC----AAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAA 138779
||| |||| |||| || ||||||| | ||| || ||| | ||||
Sbjct 72576 CCCTGAGAAAC--AGGGGA--ACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCA- 72522
Query 138780 CTCGTTGC-TCGCC---TCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGA 138835
| ||| || | ||| ||| | | ||| || || ||| |||| || ||||
Sbjct 72521 ---GCTGCACCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGA 72465
Query 138836 GCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCC 138895
| || ||||||| |||| | ||||| ||||| | ||| || || || || |
Sbjct 72464 GGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGAC 72405
Query 138896 CTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC---G 138951
| || || || | |||| ||||| ||||||| || ||| ||||| || ||
Sbjct 72404 CCTGGACACCGAGACCGATGGGGCGGTGGCGCA----TGTTGCTGTTGCGAGCCTCCTGA 72349
Query 138952 ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCT 139003
| ||| || | ||| || ||||||||| |||| | || || || || ||||
Sbjct 72348 ACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCT 72297
>seq439
Length=70108
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || ||||| ||||| ||||| || || || || || | ||
Sbjct 4106 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 4047
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || || || ||
Sbjct 4046 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3987
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||||| || || ||||| ||||| | | | | || || || |||
Sbjct 3986 CAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 3927
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || || |||||||| |||| |||| || ||
Sbjct 3926 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGCCTGCGTGGTGG 3880
>seq356
Length=453554
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || |||||||| || || || ||| | |
Sbjct 345366 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 345425
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || ||||| ||
Sbjct 345426 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 345485
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||| || ||||| || |||||||| ||| | | | |||| || || |||
Sbjct 345486 CAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 345545
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || || ||| | || | || | || |||||
Sbjct 345546 ATCCAGAAGGAGTCTACCCTGCACCTTGTCCTTCGCCTCCGTGGAGG 345592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449891717588880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |