Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq82 297 2e-75
seq439 122 8e-23
seq356 116 4e-21
seq268 111 2e-19
seq836 109 5e-19
>seq82
Length=153332
Score = 297 bits (328), Expect = 2e-75
Identities = 1004/1544 (65%), Gaps = 51/1544 (3%)
Strand=Plus/Minus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
|| || ||||| ||||| || || || || || ||| | || | |||| || | ||
Sbjct 72798 TTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGC 72739
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
||||| |||||||||||||||| ||||||| ||| | || || |||||| ||| ||
Sbjct 72738 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACG 72679
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439
|| || |||||||| | |||| | | || || | ||||| ||| |||||||||||
Sbjct 72678 AGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAG 72619
Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499
|| ||| || | || ||||||||||| ||||| || ||||| | | | |||
Sbjct 72618 AGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAA 72559
Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-TCGCCTCGAGCGC 148558
|||||||||| ||| || || | | || ||||| | ||| | | ||| ||
Sbjct 72558 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGC 72500
Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGC-CGACTCG---CTTT 148614
||| ||| || |||||| || | | ||||||| | ||| | |||| |
Sbjct 72499 AGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG----GTCGCGAGCCTCGGGAGACT 72444
Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674
|| | |||||||| || || || || || ||||| ||||| || || | || ||||
Sbjct 72443 CGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGG 72384
Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATG 148733
| ||||| |||||| | ||| || ||| || | || ||||||||| |||||||
Sbjct 72383 GGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTAGTGGTTGACGTCGATG 72325
Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA- 148792
|| ||| || ||||| || || |||| || | | | ||| | || |||||
Sbjct 72324 ATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAG 72265
Query 148793 --------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844
|||| || || | | | || || ||||| ||||| || ||||| ||
Sbjct 72264 ACTCCCTCGTTGTAGTCAACAAAG-GTGGG--CAGGGCGAGCGAGGCCAGGTTGCAGACA 72208
Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATC 148904
|| |||||| || |||| |||||| | ||||| | ||| || ||| || |||
Sbjct 72207 GCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATA 72148
Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964
||| | |||||| || |||||||||| |||| || |||||||| |||||| | ||
Sbjct 72147 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 72088
Query 148965 CCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACTT 149022
||||| || ||| | || | ||| | | | || | ||| || |||
Sbjct 72087 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCA--GAGCTTCTGAGC-----CTT 72035
Query 149023 GCTGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGC 149074
|| || | |||||||| ||||||||| | ||| | || ||| ||| |
Sbjct 72034 CATGGTC-TTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC--CTCAAACTC 71978
Query 149075 CTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCC 149134
|||||||||||| ||| | || || ||||| | || ||||||||||| | ||| | ||
Sbjct 71977 CTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCC 71918
Query 149135 GTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCG 149194
| | | ||| | |||||| || || ||||| | |||||| ||| | ||||| ||
Sbjct 71917 ATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACG 71858
Query 149195 CGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGC 149254
|| || || ||| ||| ||||| | | | | ||| | || ||
Sbjct 71857 GGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGC 71798
Query 149255 GTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGAC 149311
|||||| ||||||| ||| | |||| || || |||| ||||| |||||||||||
Sbjct 71797 GTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCGAC 71738
Query 149312 GTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTT 149371
|| ||| | ||||||| || || || | |||||| | | || ||| || |||||
Sbjct 71737 GTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTACCGTT 71678
Query 149372 AGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC 149431
|| | ||| |||| || || | ||| ||||||| || ||||| ||
Sbjct 71677 CGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCACC 71618
Query 149432 GCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGT 149490
| | ||| ||||| |||| |||| ||| || ||||| ||||| || ||
Sbjct 71617 GGCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCATAGATACCCTCAATAGAGT 71559
Query 149491 CGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGA 149550
| ||||||| | || ||||| ||| ||| || | | | || ||||| ||
Sbjct 71558 CCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCGGCGTTGA 71499
Query 149551 ACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGC 149609
| | ||||| |||||| || || | || || | ||||| | ||| | ||||
Sbjct 71498 AGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCG-ACATCAGGTTGTAGGTTTCGATG 71440
Query 149610 ACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGT 149669
||||| || | ||| || || ||| || | |||||| ||||| | ||| ||||| |||
Sbjct 71439 ACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGT 71380
Query 149670 CGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCA 149729
| ||| || | ||| ||| ||||| | ||| | || | |||||| ||||
Sbjct 71379 CTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGAAGCCG 71320
Query 149730 AAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773
||||| | ||||| ||||||||| | | | | ||||| | |||
Sbjct 71319 AAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTC 71276
>seq439
Length=70108
Score = 122 bits (134), Expect = 8e-23
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||||||||| ||||| || ||||| ||| | ||| ||||||||||
Sbjct 3901 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGC 3960
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || || | || || ||||||||||| || |||||||| |||||||| ||||
Sbjct 3961 TGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC 4020
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||||| | || | ||||||| | |||||| || | ||||| || || ||
Sbjct 4021 TTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCC 4080
Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661
|| || || || ||||| |||||||||
Sbjct 4081 GTTAGGGTCTTGACGAAGATCTGCATG 4107
>seq356
Length=453554
Score = 116 bits (128), Expect = 4e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||||||||| ||||| || ||||| ||| || ||| |||||| |||
Sbjct 345059 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 345000
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || ||| |||| || ||||||||||| || || ||||| |||||||| ||||
Sbjct 344999 TGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATC 344940
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
||| ||||| | || | || |||| || ||| || || | ||||| ||| ||||||
Sbjct 344939 TTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCG 344880
Query 133635 GT 133636
||
Sbjct 344879 GT 344878
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || |||||||| | || ||| ||| | ||||| | |||||| ||
Sbjct 345790 GTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCA-TCCTCCAACTGCTTACC 345732
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || || ||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct 345731 AGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTT 345672
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| |||||| | | ||| || || | || | || || || |||| ||
Sbjct 345671 GACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTTTCCAGTCAAGGT 345612
Query 133643 TTTTACGAAAATCTGCAT 133660
|| |||||||| |||||
Sbjct 345611 CTTGACGAAAATTTGCAT 345594
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || ||||| || || ||| ||| | || || |||||||| |
Sbjct 345563 GGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA-TCTTCCAGCTGCTTTC 345505
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| |||| || |||||||||||||| ||||| || |||||||| |||||| ||
Sbjct 345504 CGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACT 345445
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | ||||| | | || || || | ||| | || ||||| || || |
Sbjct 345444 TGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGG 345385
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| ||||||||
Sbjct 345384 TCTTGACGAAGATCTGCAT 345366
Score = 102 bits (112), Expect = 8e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||||||||| ||||| || ||||||||| || || |||||| |||
Sbjct 345343 AAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAAGC 345284
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||| ||| | || | ||||||||||| || || ||||| || ||||| |||
Sbjct 345283 TGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATC 345224
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
||| ||||| | || | || || | | ||| || || | ||||| ||| ||||||
Sbjct 345223 TTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCG 345164
Query 133635 GTCAGAGTTTTTACGA 133650
|| || || || ||||
Sbjct 345163 GTAAGCGTCTTGACGA 345148
>seq268
Length=131150
Score = 111 bits (122), Expect = 2e-19
Identities = 159/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699
||||| || ||||| ||||| || ||||| || || || |||||||||||| || |||
Sbjct 103541 AGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTC 103482
Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759
|| |||||||| | || | |||||| |||| |||| ||| ||| || |||
Sbjct 103481 AGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 103422
Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819
|| | ||||| ||| ||| ||||| || | |||| ||| || | | | ||| |
Sbjct 103421 AAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAGGACTTCTCATCG 103362
Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863
|||||||||| |||||| |||||||| ||||| | ||| ||
Sbjct 103361 CTAATCCACTTCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGG 103318
>seq836
Length=245415
Score = 109 bits (120), Expect = 5e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||||||||||||||| ||| | || | |||||||||||||| |||||||| |||||
Sbjct 44315 GTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 44374
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | |||||| | || ||| || || | ||| |
Sbjct 44375 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAAT 44434
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652
||| || || ||||| || || ||||||
Sbjct 44435 GGTCTTACCCGTCAGGGTCTTCACGAAA 44462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483414479273040
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