Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq82 297 2e-75 seq439 122 8e-23 seq356 116 4e-21 seq268 111 2e-19 seq836 109 5e-19 >seq82 Length=153332 Score = 297 bits (328), Expect = 2e-75 Identities = 1004/1544 (65%), Gaps = 51/1544 (3%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| ||||| || || || || || ||| | || | |||| || | || Sbjct 72798 TTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGC 72739 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||||||||||||||| ||||||| ||| | || || |||||| ||| || Sbjct 72738 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACG 72679 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 || || |||||||| | |||| | | || || | ||||| ||| ||||||||||| Sbjct 72678 AGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAG 72619 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || ||| || | || ||||||||||| ||||| || ||||| | | | ||| Sbjct 72618 AGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAA 72559 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-TCGCCTCGAGCGC 148558 |||||||||| ||| || || | | || ||||| | ||| | | ||| || Sbjct 72558 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGC 72500 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGC-CGACTCG---CTTT 148614 ||| ||| || |||||| || | | ||||||| | ||| | |||| | Sbjct 72499 AGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG----GTCGCGAGCCTCGGGAGACT 72444 Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674 || | |||||||| || || || || || ||||| ||||| || || | || |||| Sbjct 72443 CGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGG 72384 Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATG 148733 | ||||| |||||| | ||| || ||| || | || ||||||||| ||||||| Sbjct 72383 GGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTAGTGGTTGACGTCGATG 72325 Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA- 148792 || ||| || ||||| || || |||| || | | | ||| | || ||||| Sbjct 72324 ATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAG 72265 Query 148793 --------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844 |||| || || | | | || || ||||| ||||| || ||||| || Sbjct 72264 ACTCCCTCGTTGTAGTCAACAAAG-GTGGG--CAGGGCGAGCGAGGCCAGGTTGCAGACA 72208 Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATC 148904 || |||||| || |||| |||||| | ||||| | ||| || ||| || ||| Sbjct 72207 GCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATA 72148 Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964 ||| | |||||| || |||||||||| |||| || |||||||| |||||| | || Sbjct 72147 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 72088 Query 148965 CCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACTT 149022 ||||| || ||| | || | ||| | | | || | ||| || ||| Sbjct 72087 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCA--GAGCTTCTGAGC-----CTT 72035 Query 149023 GCTGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGC 149074 || || | |||||||| ||||||||| | ||| | || ||| ||| | Sbjct 72034 CATGGTC-TTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC--CTCAAACTC 71978 Query 149075 CTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCC 149134 |||||||||||| ||| | || || ||||| | || ||||||||||| | ||| | || Sbjct 71977 CTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCC 71918 Query 149135 GTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCG 149194 | | | ||| | |||||| || || ||||| | |||||| ||| | ||||| || Sbjct 71917 ATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACG 71858 Query 149195 CGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGC 149254 || || || ||| ||| ||||| | | | | ||| | || || Sbjct 71857 GGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGC 71798 Query 149255 GTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGAC 149311 |||||| ||||||| ||| | |||| || || |||| ||||| ||||||||||| Sbjct 71797 GTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCGAC 71738 Query 149312 GTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTT 149371 || ||| | ||||||| || || || | |||||| | | || ||| || ||||| Sbjct 71737 GTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTACCGTT 71678 Query 149372 AGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC 149431 || | ||| |||| || || | ||| ||||||| || ||||| || Sbjct 71677 CGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCACC 71618 Query 149432 GCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGT 149490 | | ||| ||||| |||| |||| ||| || ||||| ||||| || || Sbjct 71617 GGCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCATAGATACCCTCAATAGAGT 71559 Query 149491 CGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGA 149550 | ||||||| | || ||||| ||| ||| || | | | || ||||| || Sbjct 71558 CCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCGGCGTTGA 71499 Query 149551 ACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGC 149609 | | ||||| |||||| || || | || || | ||||| | ||| | |||| Sbjct 71498 AGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCG-ACATCAGGTTGTAGGTTTCGATG 71440 Query 149610 ACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGT 149669 ||||| || | ||| || || ||| || | |||||| ||||| | ||| ||||| ||| Sbjct 71439 ACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGT 71380 Query 149670 CGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCA 149729 | ||| || | ||| ||| ||||| | ||| | || | |||||| |||| Sbjct 71379 CTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGAAGCCG 71320 Query 149730 AAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 ||||| | ||||| ||||||||| | | | | ||||| | ||| Sbjct 71319 AAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTC 71276 >seq439 Length=70108 Score = 122 bits (134), Expect = 8e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||| ||| | ||| |||||||||| Sbjct 3901 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGC 3960 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || || ||||||||||| || |||||||| |||||||| |||| Sbjct 3961 TGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC 4020 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||||| | |||||| || | ||||| || || || Sbjct 4021 TTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCC 4080 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||| ||||||||| Sbjct 4081 GTTAGGGTCTTGACGAAGATCTGCATG 4107 >seq356 Length=453554 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||| ||| || ||| |||||| ||| Sbjct 345059 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 345000 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| |||| || ||||||||||| || || ||||| |||||||| |||| Sbjct 344999 TGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATC 344940 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | || | || |||| || ||| || || | ||||| ||| |||||| Sbjct 344939 TTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCG 344880 Query 133635 GT 133636 || Sbjct 344879 GT 344878 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||| | || ||| ||| | ||||| | |||||| || Sbjct 345790 GTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCA-TCCTCCAACTGCTTACC 345732 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||||||||| ||||| |||||||| ||||| ||| Sbjct 345731 AGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTT 345672 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||||| | | ||| || || | || | || || || |||| || Sbjct 345671 GACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTTTCCAGTCAAGGT 345612 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 345611 CTTGACGAAAATTTGCAT 345594 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || || ||| ||| | || || |||||||| | Sbjct 345563 GGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA-TCTTCCAGCTGCTTTC 345505 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || |||||||||||||| ||||| || |||||||| |||||| || Sbjct 345504 CGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACT 345445 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | | || || || | ||| | || ||||| || || | Sbjct 345444 TGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGG 345385 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 345384 TCTTGACGAAGATCTGCAT 345366 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||||||| || || |||||| ||| Sbjct 345343 AAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAAGC 345284 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | || | ||||||||||| || || ||||| || ||||| ||| Sbjct 345283 TGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATC 345224 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | || | || || | | ||| || || | ||||| ||| |||||| Sbjct 345223 TTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCG 345164 Query 133635 GTCAGAGTTTTTACGA 133650 || || || || |||| Sbjct 345163 GTAAGCGTCTTGACGA 345148 >seq268 Length=131150 Score = 111 bits (122), Expect = 2e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| || ||||| ||||| || ||||| || || || |||||||||||| || ||| Sbjct 103541 AGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTC 103482 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || |||||||| | || | |||||| |||| |||| ||| ||| || ||| Sbjct 103481 AGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 103422 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | ||||| ||| ||| ||||| || | |||| ||| || | | | ||| | Sbjct 103421 AAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAGGACTTCTCATCG 103362 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||||||||| |||||| |||||||| ||||| | ||| || Sbjct 103361 CTAATCCACTTCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGG 103318 >seq836 Length=245415 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || | |||||||||||||| |||||||| ||||| Sbjct 44315 GTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 44374 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| | || ||| || || | ||| | Sbjct 44375 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAAT 44434 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 ||| || || ||||| || || |||||| Sbjct 44435 GGTCTTACCCGTCAGGGTCTTCACGAAA 44462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414479273040