Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq356 93.3 1e-13
>seq356
Length=453554
Score = 93.3 bits (102), Expect = 1e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| || || || || || | || || ||| || |||
Sbjct 345369 CAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCAGAC 345428
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || || || || || ||| ||
Sbjct 345429 ACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAG 345488
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || || ||||||||||||||| |||||||||| | || || | || |||||| ||
Sbjct 345489 CGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACATC 345548
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| |||||||| || ||||||||
Sbjct 345549 CAGAAGGAGTCTACCCTGCACCTTGT 345574
Score = 91.5 bits (100), Expect = 3e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
||| ||||| || || || || ||||| | || || || |||||| || ||||
Sbjct 345152 CAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCGACAA 345211
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||| ||||||||| || ||||| || ||| || ||| || | | |||||
Sbjct 345212 TGTCAAGTCAAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGCGCTTGATCTT 345271
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || |||||| | || || ||| |||| || ||||||||||| | ||||| |||||
Sbjct 345272 CGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTCAGAAGGAGTC 345331
Query 206364 TACTCTTCAC 206373
|| || |||
Sbjct 345332 CACCCTCCAC 345341
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| ||||| ||||| || | || || || ||| ||||| | || || |||
Sbjct 345618 ACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCGGACACGATTGACAACGTCAAGTCG 345677
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
|||||||| || || || || ||| || ||| || | |||||||| || || |||
Sbjct 345678 AAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTTATCTTTGCTGGTAAG 345737
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||| ||||| | || ||| ||||||||| ||||||| ||||| || |||||
Sbjct 345738 CAGTTGGAGGATGGTCGCACCTTGAGTGATTACAACATCCAGAAGGAGTCGACGCTTCAT 345797
Query 206374 CTTGT 206378
|||||
Sbjct 345798 CTTGT 345802
Score = 89.7 bits (98), Expect = 1e-12
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
|||||||| || |||||||| ||||||| || ||||||| || || | |||||||||
Sbjct 345574 ACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 345515
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
||||||||||||||||| || || || || ||
Sbjct 345514 AGCTGCTTTCCGGCGAAAATCAGGCGCTGCTG 345483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181804961385366
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |