Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq298 113 5e-20
>seq298
Length=128316
Score = 113 bits (124), Expect = 5e-20
Identities = 285/440 (65%), Gaps = 44/440 (10%)
Strand=Plus/Plus
Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055
|| |||| | ||||| || ||||||| |||||| || ||||||||||| || || ||||
Sbjct 44434 CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCGAGGC 44493
Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAG---------------CTCCCCGT 147100
|||| || | |||| |||||||||||| || || ||| ||||
Sbjct 44494 CCATATCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTTGGCTTCTCTCCGT 44553
Query 147101 C---------------GGCC------------ACGTAAAACTG-GCACAGGATGTGGCAC 147132
| |||| ||||| ||||| ||| | ||||||||
Sbjct 44554 CAGCGGGTGCACCGCGGGCCCGCGGGTAGGAGACGTAGAACTGCGCAAAC-ATGTGGCAT 44612
Query 147133 GGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG 147192
||||| || ||||| ||||||||||||||||| || || | | || | |
Sbjct 44613 GGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGAGGATGCGGCGG 44672
Query 147193 CTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCC 147252
| || ||| |||| | || | ||| ||| |||||||| ||||||||||||
Sbjct 44673 TCGTACGGATTCGTCTTCAGCTTGTGGATGACCTCGGCGAGCTGGTCGACGCCCTGGCCC 44732
Query 147253 CCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTAC 147312
||| | ||| | ||| || ||| ||| |||||||| | ||| ||||| |||||
Sbjct 44733 GTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAG 44792
Query 147313 ACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGG 147372
|| || || |||||||| | | |||||||| || | | | ||| |||||| |
Sbjct 44793 ACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGC 44852
Query 147373 GACCCGTGGGCGTCCCAGAT 147392
|| |||| | ||||||||||
Sbjct 44853 GAGCCGTTGCCGTCCCAGAT 44872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583480370894400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |