Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq298 113 5e-20 >seq298 Length=128316 Score = 113 bits (124), Expect = 5e-20 Identities = 285/440 (65%), Gaps = 44/440 (10%) Strand=Plus/Plus Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055 || |||| | ||||| || ||||||| |||||| || ||||||||||| || || |||| Sbjct 44434 CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCGAGGC 44493 Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAG---------------CTCCCCGT 147100 |||| || | |||| |||||||||||| || || ||| |||| Sbjct 44494 CCATATCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTTGGCTTCTCTCCGT 44553 Query 147101 C---------------GGCC------------ACGTAAAACTG-GCACAGGATGTGGCAC 147132 | |||| ||||| ||||| ||| | |||||||| Sbjct 44554 CAGCGGGTGCACCGCGGGCCCGCGGGTAGGAGACGTAGAACTGCGCAAAC-ATGTGGCAT 44612 Query 147133 GGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG 147192 ||||| || ||||| ||||||||||||||||| || || | | || | | Sbjct 44613 GGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGAGGATGCGGCGG 44672 Query 147193 CTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCC 147252 | || ||| |||| | || | ||| ||| |||||||| |||||||||||| Sbjct 44673 TCGTACGGATTCGTCTTCAGCTTGTGGATGACCTCGGCGAGCTGGTCGACGCCCTGGCCC 44732 Query 147253 CCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTAC 147312 ||| | ||| | ||| || ||| ||| |||||||| | ||| ||||| ||||| Sbjct 44733 GTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAG 44792 Query 147313 ACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGG 147372 || || || |||||||| | | |||||||| || | | | ||| |||||| | Sbjct 44793 ACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGC 44852 Query 147373 GACCCGTGGGCGTCCCAGAT 147392 || |||| | |||||||||| Sbjct 44853 GAGCCGTTGCCGTCCCAGAT 44872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583480370894400