Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq439 122 8e-23 seq356 111 1e-19 seq836 102 7e-17 >seq439 Length=70108 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | || |||||| || |||||||| |||| Sbjct 3880 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3939 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| || ||||| |||| ||||||||||| | || Sbjct 3940 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 3999 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | | |||||| || |||||| Sbjct 4000 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 4059 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || |||||||| | || || || || |||||||| Sbjct 4060 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 4106 >seq356 Length=453554 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| |||||| || | || |||| ||||||||| ||||| Sbjct 345785 CTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAA 345726 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||||| || |||||||||| ||||| ||| | || Sbjct 345725 GATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 345667 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | || ||||| || || ||||| || || | Sbjct 345666 TGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGA 345607 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 345606 CGAAAATTTGCAT 345594 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || | || |||||| |||||||||||||||| | Sbjct 345364 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 345305 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| || || || ||||| ||||||||||| | ||| Sbjct 345304 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 345245 Query 35630 ACGCTCTCCTTGTCCATGATCTTT 35653 | || ||| |||||| |||||| Sbjct 345244 ATGCCCTCTTTGTCCTGAATCTTT 345221 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || |||| || |||||||| || || || Sbjct 345045 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAA 344986 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | |||| || |||||||||| ||||||| ||| | | | Sbjct 344985 AATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATT 344926 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | || ||| || || ||||| | ||||| || || || || Sbjct 344925 GTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 344878 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 345557 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 345498 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | | |||||||||| |||||| ||| | || Sbjct 345497 AATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 345439 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| |||||| ||||| | || || || || || || | || || | Sbjct 345438 TGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGA 345379 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 345378 CGAAGATCTGCAT 345366 >seq836 Length=245415 Score = 102 bits (112), Expect = 7e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| | ||| || |||| || |||||||| || || || | Sbjct 44281 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 44340 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 44341 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 44400 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||| || || ||||| | || || || |||||||||| || ||||| | Sbjct 44401 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 44460 Query 35727 A 35727 | Sbjct 44461 A 44461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450787705873680