Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq110 100 2e-16 >seq110 Length=486177 Score = 100 bits (110), Expect = 2e-16 Identities = 192/282 (68%), Gaps = 11/282 (4%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||| | || ||||||||| | | || || | || |||||||| ||||| || Sbjct 289288 CCCAAGATTATCAACGGTCCTGAAGTGCTCAACAAGTTCGTCGGTCAATCCGAAGAGAAC 289347 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547 | ||| ||||||| || || || |||| | | || | |||||| | | ||| Sbjct 289348 ATCCGAAAGATGTTTGCCGATGCAGA-GAAGGAGTACAAGGAGAAGGGCGACCAGAGTGG 289406 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT-- 19605 | |||||||| || | || || ||||| || |||| ||||| |||||||||||| Sbjct 289407 CCTTCACATTATCATCTTTGACGAGTTGGATGCCGTCTGCAAGCAGAGAGGTTCTGGTGC 289466 Query 19606 -------GTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 | | ||| || ||||| ||||||||| || || || | ||| | || || Sbjct 289467 TGGTGGCGGTACTGGCGTTGGTGACAGTGTTGTCAACCAGCTTCTTACCAAACTCGATGG 289526 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 |||| | || || || || ||||| | ||||| ||||| || Sbjct 289527 TGTTGATCAGCTCAACAACATTTTGCTCATTGGTATGACCAA 289568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397450933181230