Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq82 293 3e-74
seq268 143 3e-29
>seq82
Length=153332
Score = 293 bits (324), Expect = 3e-74
Identities = 976/1496 (65%), Gaps = 33/1496 (2%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || ||| | ||||| || || ||| |||| |||
Sbjct 71381 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 71440
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| || || ||| || |||||| |||| | | ||| |||||| | || || ||||
Sbjct 71441 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCCACACTCT 71498
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| || ||||| || |||| ||||| ||||||||| ||| || |||||||
Sbjct 71499 TCAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGG 71558
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457
|||| || | |||||||||| || || | | | | ||||| | ||||| ||| |||
Sbjct 71559 ACTCTATTGAGGGTATCTATGACACCCTCAAG-ACT-TGCGCCATGATCTCCAAGATGGC 71616
Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517
|| || ||||| | || |||| | | |||| || |||| || ||
Sbjct 71617 CGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCAC 71676
Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577
|| ||| || | ||| | | || ||||| || || || ||| ||| || |||||
Sbjct 71677 GAACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTA 71736
Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
|| | || | ||| | | | | || || |||| | || |||||||| ||||
Sbjct 71737 CGTCGACCAGGGTGG-CAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGC 71795
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|||| ||| || | || ||| | || ||||| ||||| || | ||||||| ||
Sbjct 71796 ACGCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCG 71855
Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753
||| || || ||| ||| ||||||||||| || |||||||||||||| || ||| |||
Sbjct 71856 CCCGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGA 71915
Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812
||| | ||| ||||| | || || || || || ||||| || |||| | ||
Sbjct 71916 ATGGGGACTGGACTCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCCGACTGCTACGGC 71974
Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGG 104870
||||||||||| ||| | ||| ||||||||| | || || | | | | || |||
Sbjct 71975 GAGGAGTTTGAGGCCTTGTACGAGAAGTACGAGCA-GATGGGCAAGGGTC-GCAAGACCA 72032
Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929
|| ||| | || | | ||| | || || ||| || | || ||||||||||||| ||
Sbjct 72033 TGAAGGCT-CAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCC 72091
Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989
| |||||| ||||| || ||| |||| ||||| || || ||||| | || |||
Sbjct 72092 TTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATC 72151
Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049
|| ||||| ||||| || || || | || | | |||||| |||||
Sbjct 72152 CGCAGCTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTC 72211
Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGA 105108
|| ||||| || || |||| || |||| | ||| || | || || || | | ||
Sbjct 72212 TGCAACCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTC-TACGA 72270
Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168
| | || |||||||| || || | || | ||||| |||||| | || ||
Sbjct 72271 CTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATCGA 72330
Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228
|| ||||| ||| || ||||| || || ||| | ||||| || || ||
Sbjct 72331 CGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATCGG 72390
Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTC 105285
||||||||| |||||||| || |||| ||| | ||| || | | || || ||
Sbjct 72391 TCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGC---CCTTCGAGTC 72447
Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC--CGCTCTT 105343
||| || || |||| | || || |||||||| || ||||| | |||
Sbjct 72448 TCCCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCTCAC 72507
Query 105344 GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403
| | || | || |||| ||| || || || || | || | |||||||| ||
Sbjct 72508 CATGTCGGTGC--AGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCT 72565
Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGAC 105463
| ||| || || | || || | ||| |||||| | | || || | || || |||
Sbjct 72566 GTTTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGAC 72625
Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523
||||| ||| | ||||| | || ||| || | ||| | || ||| ||| ||| | ||
Sbjct 72626 TGGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCG 72685
Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583
|| ||||| || ||| |||| | || |||||||| || || || |||||||| ||||||
Sbjct 72686 CCCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTAC 72745
Query 105584 ACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT 105643
|| | |||||||| | | | | || || || ||||| | ||||||||
Sbjct 72746 ACCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGG 72805
Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 105699
||| || | || ||| || || ||||| |||||| | | |||||| | | |||
Sbjct 72806 CTCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCAT 72861
>seq268
Length=131150
Score = 143 bits (158), Expect = 3e-29
Identities = 168/225 (75%), Gaps = 9/225 (4%)
Strand=Plus/Plus
Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 94779
|||||| |||||||| || || | ||||| || || ||||| |||||||| ||
Sbjct 103306 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGC 103362
Query 94780 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 94839
||| ||||| ||||| || |||| ||| | || || || ||||||||||||
Sbjct 103363 GATGAGAAGTCC---TCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATC 103419
Query 94840 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 94899
|||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| |||
Sbjct 103420 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGT 103479
Query 94900 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
|| ||||||||||||||| ||||||||||| ||||| || |||
Sbjct 103480 CTGACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCAC 103524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583253173865040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |