Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq356 143 8e-29 seq439 120 9e-22 seq908 111 5e-19 seq357 86.0 2e-11 >seq356 Length=453554 Score = 143 bits (158), Expect = 8e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || ||||||||||| || ||||| || || || || || Sbjct 345827 TTACTGACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTA 345768 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 |||| || || || ||||| || | || || ||||||||||| ||||| ||||| || Sbjct 345767 ATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTC 345708 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 |||||||| || || || |||||||| || | || || || ||||||| || || | Sbjct 345707 GGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGA 345648 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||||| |||||||| || | || || || ||||| ||||| Sbjct 345647 CTCGACCTCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 345594 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| || ||||| || ||||| Sbjct 345368 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATC 345309 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || || || ||||| | || ||||| ||||| Sbjct 345308 GGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGG 345249 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || ||||| |||||||| || | || ||||| || || | |||||| | || Sbjct 345248 GGGAATGCCCTCTTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTC 345189 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| ||||| || | ||||| ||||| || || || || Sbjct 345188 AACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 345150 Score = 107 bits (118), Expect = 6e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | ||||| || ||||| || || || || || || Sbjct 345084 CATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 345025 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || ||||| || || || || || ||||| ||||| Sbjct 345024 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGG 344965 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || ||||| || || | ||| || | || Sbjct 344964 GGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTC 344905 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| || | ||||| ||||| Sbjct 344904 GACCTCAAGGGTGATGGTCTTGCCGGT 344878 >seq439 Length=70108 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || || || || || || Sbjct 3876 CATACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 3935 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || |||||||||||||| || || ||||| ||||| Sbjct 3936 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGG 3995 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| || || | || || | || Sbjct 3996 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTC 4055 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || ||||| || || || || |||||||| Sbjct 4056 CACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 4106 >seq908 Length=571281 Score = 111 bits (122), Expect = 5e-19 Identities = 435/674 (65%), Gaps = 10/674 (1%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| || ||||| |||||||| |||||||| || || || | ||| || || || || Sbjct 528018 GAAATCATCGCAAACGATCAAGGAAACAGAACCACACCGTCTTTCGTCGCCTTCACGGAC 527959 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| |||| || ||| | || || || || | || || || | || ||| Sbjct 527958 ACGGAGCGTCTGATCGGCGATGCGGCCAAGAACCAGGTGGCGATGAACCCGCACAACACG 527899 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGA 349440 || || || || ||||| || || || | ||||| | ||| || | || Sbjct 527898 GTGTTCGACGCCAAGCGCCTGATCGGGCGCAAGTTCAAC-GACCCGGAGGTGCAGGCCGA 527840 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGA-CGGTGATAAACCAATTATTGAGG 349499 | || || || || || | || || | | |||| ||| || || | || |||| Sbjct 527839 CATGAAGCACTTCCCGTTCAAGGTGGT-CGACAAGAACGGC---AAGCCCAACATCGAGG 527784 Query 349500 TTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 | || | || || || || || || || ||||| || || || | ||||| | Sbjct 527783 TCGAGTTCAAGGGCGAGACCAAGACG-TTCACGCCCGAGGAGATCTCGGCCATGGTCCTG 527725 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || ||| || | ||| || || | | |||| || | | || || | Sbjct 527724 GTCAAGATGCGCGAGACTGCCGAGGCTTTCCTCGGTGGCCAGGTCAACAACGCCGTCGTC 527665 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || || |||||||| || || || || || || |||| Sbjct 527664 ACTGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATT 527605 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || || | || || || || ||||| || || || || || || || Sbjct 527604 GCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTACGGC 527545 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || | | || || || |||| || || ||| | ||||||||||| Sbjct 527544 CTGGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTCGGTGGTGGTACC 527485 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| || || || || || | || |||||| Sbjct 527484 TTCGATGTGTCCCTCCTGACCATTGAGGAGGGCATCTTCGAGGTCAAGTCCACCGCTGGT 527425 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || || || ||||| || || || || || Sbjct 527424 GACACCCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCGTCAACGAG 527365 Query 349919 TTTAAGCGTCAAGC 349932 || ||||| ||||| Sbjct 527364 TTCAAGCG-CAAGC 527352 >seq357 Length=116144 Score = 86.0 bits (94), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || || ||| || || | |||||| || || ||||| || || Sbjct 7051 CGAGGGACACCAAGCGTGACGTTC---TTGGAAGAAACACCGGCGAAATGGAATGTGTTC 7107 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| |||||||| || || ||||| || Sbjct 7108 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATGACACCGACCATCTCA 7167 Query 377578 CCAGGATTGAC 377588 ||||| |||| Sbjct 7168 CCAGGGCTGAC 7178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515234092749938