Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq82 322 5e-83 seq629 118 1e-21 >seq82 Length=153332 Score = 322 bits (356), Expect = 5e-83 Identities = 534/764 (70%), Gaps = 24/764 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | |||||| ||||||||| ||| ||| || || ||| Sbjct 71394 TCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTCATCGAAACCTACA 71453 Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || | ||| ||| |||| ||| || |||||| | || || || |||||||| |||| Sbjct 71454 ACCTGATGTCGAGC---AAGTTCTTCACTCACGCCTCTCCCACACTCTTCAACGCCGGTA 71510 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | ||| | ||| |||| |||||||| || | |||||||| ||||| || || | Sbjct 71511 CCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGACTCTATTGAGG 71570 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | ||||| || || |||||| || ||| ||||||||| | | ||||| || ||| Sbjct 71571 GTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGTGGCATTGGTC 71630 Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 || || || | || |||| || | |||| || || || |||||||| | | Sbjct 71631 TCAACG--TCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAACGGTACCTC 71688 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | | || |||| ||||||||||| |||||||||||||| || || |||||| ||||||| Sbjct 71689 CAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGG 71748 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| |||||| || | |||||||| ||||| ||||| ||||||||||| | | Sbjct 71749 TGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACGCCGATGTCTT 71808 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 || || | || |||| ||| || || | || ||| | ||| ||||||||| || Sbjct 71809 CGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGACCTTTT 71868 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 || || |||||||| |||||||||||| | | |||||||||| | | ||| ||| Sbjct 71869 CCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGACTGGAC 71928 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 || |||||||| ||||| ||||| ||||| | | || |||||| ||||||||| | | Sbjct 71929 TCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTG-CTACGGCGAGGAGTTTGAGG 71987 Query 53787 AGATGTATCGGACGTAC--GCAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 |||| || |||| |||| | |||| ||| |||| | ||||| | Sbjct 71988 CCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGC------AAGACCATGAAGGCTC 72041 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| |||| |||||| || |||| ||||| || | || | |||| || Sbjct 72042 AGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCT 72101 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 |||||||| | | |||| |||||||||||||||||| | ||| Sbjct 72102 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGC 72145 Score = 138 bits (152), Expect = 1e-27 Identities = 547/846 (65%), Gaps = 26/846 (3%) Strand=Plus/Plus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||||| ||||| || || | || || || ||||||||| | ||||| Sbjct 72269 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATC 72328 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 ||| || ||||||| | | | ||| ||||| |||| | || ||||| |||||| Sbjct 72329 GACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATC 72388 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276 | ||||||| ||||| | || || |||| || ||| | |||||||||| || Sbjct 72389 GGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGCCCTTCGAGTCT 72448 Query 55277 GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGA 55335 ||||| || | ||| || | |||||| || | ||||||| || || ||| Sbjct 72449 CCCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGAC-CATCTACCACGCTGCCCTCAC 72507 Query 55336 GGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGC 55395 |||| || ||||| | | ||||| ||||| |||||| | | ||| || | Sbjct 72508 CATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTGT 72567 Query 55396 TGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATGTT-TG 55448 | |||| | ||||||| || | ||| | |||| || || | | | || Sbjct 72568 TTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTG 72627 Query 55449 ACAAG--TTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCC 55506 | | |||||| | | ||| | | || | |||||||| || ||||| ||||| Sbjct 72628 GGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCC 72687 Query 55507 AATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACAC 55566 ||||| || || || | |||||| |||||||||||||| || ||||| ||||| Sbjct 72688 CATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACAC 72747 Query 55567 GACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCT 55626 |||||||||||| ||| || || || |||||||| | ||||| || Sbjct 72748 CTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGCT 72807 Query 55627 CGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT-ATT 55681 | | ||||| || | || |||| ||| | || |||| || || ||| Sbjct 72808 CTTGAAGGATCTCGTCGACATGGGTCTGTGG--TCCGATGCCATGAAGAACCGCATCATT 72865 Query 55682 GTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCT-CTGCGTCTCAAGGAGAT 55737 | |||| || ||| ||||||| | | |||||| ||| | |||||| | Sbjct 72866 GCCGAGAAC---GGTTCCATCCAGAACATCCCCAACATTCCTACTGAG-GTCAAGGCCCT 72921 Query 55738 TTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGG 55797 ||| ||| || |||||||| | ||| | | | | | ||| ||| || ||||| Sbjct 72922 GTACAAGACTGTTTGGGAGATCTCGCAGCGTACTGTTGTGCAGATGGCTGCCGACCGTGG 72981 Query 55798 TGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAA 55857 ||| | |||||||||||| ||||| || ||||| |||| || | || | ||| ||| Sbjct 72982 TGCCTTCATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGGCAA 73041 Query 55858 GTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCT 55917 | | | | ||||| || ||| |||||| || || |||||||| |||||||| || Sbjct 73042 GATAACCAGCATGCATTTCGCCGGCTGGAAGCTCGGCCTGAAGACGGGCATGTACTACCT 73101 Query 55918 GCGGAC 55923 ||| || Sbjct 73102 GCGCAC 73107 >seq629 Length=310322 Score = 118 bits (130), Expect = 1e-21 Identities = 203/293 (69%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369 ||||||||||| || ||||||||| ||||| |||||||| | |||||| | ||| Sbjct 287941 AATGTAACGAGGACTGGCAGCATCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGA 288000 Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429 |||||||| | ||| | |||||| | ||| || ||||| || || | | | || || Sbjct 288001 CGGCTCCAGGCAGTTGATGTTGTTAGAGCCTACGAAGTTCTGCGCAAGGCCAATGATGGT 288060 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489 ||||| || || || ||||| || | ||||||||| | | ||| || |||| Sbjct 288061 CTGCTGGAGAGAGGCTTCGCCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCCAA 288120 Query 117490 CTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547 | | |||||| || |||| | |||| |||||| ||||| || || ||||| Sbjct 288121 TTCGACGACCTTCTGATCCTTGAC--TAAGTTCCTCTTGAAACAGGCGTATATAACCTTA 288178 Query 117548 CGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 ||||||| ||||||| ||||| ||| ||||| || ||| || |||| Sbjct 288179 CGCTGACCGGGCTTCAATCCATCGATGACGGAGGGGATAGATCGCATGTTGTC 288231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208845150800