Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq298 89.7 4e-13
>seq298
Length=128316
Score = 89.7 bits (98), Expect = 4e-13
Identities = 161/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292
||||| || || || || | ||| ||||| ||||| || || || ||||| || ||||
Sbjct 44757 TACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCG 44816
Query 30293 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30352
| |||| || || |||| | || || | || |||||| |||||||||||||
Sbjct 44817 CGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTG 44876
Query 30353 ACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTC 30411
|| ||| ||| || | |||| |||| ||||| ||||||||||||||||||
Sbjct 44877 ACGCCCGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTC 44935
Query 30412 CTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30460
| | |||||| | || ||||| | ||| || || |||||||| |||
Sbjct 44936 AGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTAGTAAGGAGGGGCAAC 44984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406305220304232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |