Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq298 89.7 4e-13 >seq298 Length=128316 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 ||||| || || || || | ||| ||||| ||||| || || || ||||| || |||| Sbjct 44757 TACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCG 44816 Query 30293 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30352 | |||| || || |||| | || || | || |||||| ||||||||||||| Sbjct 44817 CGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTG 44876 Query 30353 ACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTC 30411 || ||| ||| || | |||| |||| ||||| |||||||||||||||||| Sbjct 44877 ACGCCCGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTC 44935 Query 30412 CTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30460 | | |||||| | || ||||| | ||| || || |||||||| ||| Sbjct 44936 AGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTAGTAAGGAGGGGCAAC 44984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406305220304232