Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq298 114 1e-20
>seq298
Length=128316
Score = 114 bits (126), Expect = 1e-20
Identities = 213/302 (71%), Gaps = 8/302 (3%)
Strand=Plus/Plus
Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785
||||||||| || ||| | ||||||| || ||||| |||||| || ||| |
Sbjct 44585 GACGTAGAACTGCGCAAACA-TGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGG 44643
Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845
|||||||||||| | | ||| | | ||| | || ||| ||||| ||| ||| |
Sbjct 44644 GGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGATGA 44703
Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903
| | | || |||||||| | ||||| |||| || |||| ||| || | | ||||||
Sbjct 44704 CCT-CGGCGAGCTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGAC-ATACTC 44761
Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963
|| |||||||||| ||| ||||| |||||||| ||||| | |||||| | || ||
Sbjct 44762 GGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTG 44821
Query 6964 TGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCC 7022
| || ||| ||| |||| || || || || || |||| ||||||||||||| || |
Sbjct 44822 CGAGAGACCAACGC-TGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGC 44880
Query 7023 CC 7024
||
Sbjct 44881 CC 44882
Score = 114 bits (126), Expect = 1e-20
Identities = 213/302 (71%), Gaps = 8/302 (3%)
Strand=Plus/Minus
Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCC 34379
||| || ||||||||||||| |||| || || || || || |||| ||| ||| ||
Sbjct 44882 GGGCGTCAAGATCTGGGACGGCAACGGCTCGCGCGAGTTCCTCGACA-GCGTTGGTCTCT 44824
Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439
| || || | |||||| | ||||| |||||||| ||||| ||| |||||||||| |
Sbjct 44823 CGCACCGCGAAGTTGGCGACCTCGGCCCTGTCTACGGTTTCCAATGGCGACACTTTGGCG 44764
Query 34440 CGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTA 34497
| |||||| | | || ||| |||| || |||| ||||| | |||||||| || | |
Sbjct 44763 CCGAGTAT-GTCGACGCCAAGACGGATTACACGGGCCAGGGCGTCGACCAGCTCGCCG-A 44706
Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557
|| ||| ||| ||||| ||| || | ||| | | ||| | | ||||||||||
Sbjct 44705 GGTCATCCACAAGCTGAAGACGAATCCGTACGACCGCCGCATCCTCCTCAGCGCGTGGAA 44646
Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACG 34616
||| ||| || |||||| ||||| || ||||||| | ||| || |||||||
Sbjct 44645 CCCCGCGGACCTAAAGAAGATGGCCCTCCCGCCATGCCACA-TGTTTGCGCAGTTCTACG 44587
Query 34617 TC 34618
||
Sbjct 44586 TC 44585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448256538969120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |