Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq298 114 1e-20 >seq298 Length=128316 Score = 114 bits (126), Expect = 1e-20 Identities = 213/302 (71%), Gaps = 8/302 (3%) Strand=Plus/Plus Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 ||||||||| || ||| | ||||||| || ||||| |||||| || ||| | Sbjct 44585 GACGTAGAACTGCGCAAACA-TGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGG 44643 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 |||||||||||| | | ||| | | ||| | || ||| ||||| ||| ||| | Sbjct 44644 GGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGATGA 44703 Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903 | | | || |||||||| | ||||| |||| || |||| ||| || | | |||||| Sbjct 44704 CCT-CGGCGAGCTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGAC-ATACTC 44761 Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963 || |||||||||| ||| ||||| |||||||| ||||| | |||||| | || || Sbjct 44762 GGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTG 44821 Query 6964 TGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCC 7022 | || ||| ||| |||| || || || || || |||| ||||||||||||| || | Sbjct 44822 CGAGAGACCAACGC-TGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGC 44880 Query 7023 CC 7024 || Sbjct 44881 CC 44882 Score = 114 bits (126), Expect = 1e-20 Identities = 213/302 (71%), Gaps = 8/302 (3%) Strand=Plus/Minus Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCC 34379 ||| || ||||||||||||| |||| || || || || || |||| ||| ||| || Sbjct 44882 GGGCGTCAAGATCTGGGACGGCAACGGCTCGCGCGAGTTCCTCGACA-GCGTTGGTCTCT 44824 Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 | || || | |||||| | ||||| |||||||| ||||| ||| |||||||||| | Sbjct 44823 CGCACCGCGAAGTTGGCGACCTCGGCCCTGTCTACGGTTTCCAATGGCGACACTTTGGCG 44764 Query 34440 CGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTA 34497 | |||||| | | || ||| |||| || |||| ||||| | |||||||| || | | Sbjct 44763 CCGAGTAT-GTCGACGCCAAGACGGATTACACGGGCCAGGGCGTCGACCAGCTCGCCG-A 44706 Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557 || ||| ||| ||||| ||| || | ||| | | ||| | | |||||||||| Sbjct 44705 GGTCATCCACAAGCTGAAGACGAATCCGTACGACCGCCGCATCCTCCTCAGCGCGTGGAA 44646 Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACG 34616 ||| ||| || |||||| ||||| || ||||||| | ||| || ||||||| Sbjct 44645 CCCCGCGGACCTAAAGAAGATGGCCCTCCCGCCATGCCACA-TGTTTGCGCAGTTCTACG 44587 Query 34617 TC 34618 || Sbjct 44586 TC 44585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448256538969120