Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq356 91.5 1e-13
>seq356
Length=453554
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/232 (69%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || ||| | || ||||| ||||| || || || || || || ||
Sbjct 345594 ATGCAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCG 345653
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || || ||| ||||| || || | || || || ||
Sbjct 345654 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 345713
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || ||||| || || || |||| || | ||||| || | |||||||||
Sbjct 345714 CAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAAC 345773
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAG 23842
|| || || ||||| || | ||| | || | | |||| ||||| ||||
Sbjct 345774 ATCCAGAAGGAGTCGACGCTTCATCTTGTCCTTCGTCTGCGTGGAGG-TCAG 345824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338005291011368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |