Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq356 134 3e-26
seq439 125 2e-23
seq91 125 2e-23
seq82 122 2e-22
>seq356
Length=453554
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||| || || || || || |||| ||||| || | || || | ||||||
Sbjct 345577 AGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 345518
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || ||||| || || || || |||||||| || ||||| ||||||||
Sbjct 345517 TCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 345458
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || |||||||||||||| | ||| || || | || || |||
Sbjct 345457 TGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTC 345398
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 345397 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 345366
>seq439
Length=70108
Score = 125 bits (138), Expect = 2e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| | ||| || ||||| || || |||| ||||| |||| | ||
Sbjct 3885 ACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 3944
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||| ||||| || || || ||||| || || || ||
Sbjct 3945 GCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCC 4004
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| || | ||||| || |
Sbjct 4005 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 4064
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| ||||| | || || | ||| | |||||
Sbjct 4065 GGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 4106
>seq91
Length=152652
Score = 125 bits (138), Expect = 2e-23
Identities = 198/281 (70%), Gaps = 7/281 (2%)
Strand=Plus/Minus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500
|| ||||||||||| |||| | ||||| || | ||||||| || ||| | |
Sbjct 131123 ACTTTATATTTAATTTTTGCTTTATTTTCAGGGTTATTAGGTACAGCTTTCTCTGTATTA 131064
Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTG-AGTGGTAATAGCCAACTTT 7558
||||| ||||||||| || || ||| |||| ||||| || ||| |||| | |
Sbjct 131063 ATAAGATTAGAATTAAGTGGACCAGGTGTTCAATATATTTCAG-----ATAACCAATTAT 131009
Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618
| || ||| ||||| || ||||| | ||||||| |||||| | ||||||||||
Sbjct 131008 ATAATAGTATAATTACAGCTCATGCTATACTTATGATATTCTTTATGGTTATGCCGGCAT 130949
Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678
| || || ||||| || || | || | ||||||||| | |||| ||||||||||| |
Sbjct 130948 TAATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGTGGACCTGATATGGCAT 130889
Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
| || || | || || |||||||| ||| || |||| |||
Sbjct 130888 TCCCTAGATTAAATAACATAAGTTTCTGACTATTACCTCCT 130848
Score = 86.0 bits (94), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| || |||||||| |||||||| | |||||| || | |||||||| ||||| || |
Sbjct 130443 TTCTGGGTGACCAAAGAATCAGAAAAGATGTTGGTATAATATAGGATCACCTCCACCAGC 130502
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773
|| || || || ||||||||||||||||| ||||||||
Sbjct 130503 TGTTTCGAAGAATGATGTATTAAAATTTCTATCTGTTAAAAC 130544
>seq82
Length=153332
Score = 122 bits (134), Expect = 2e-22
Identities = 190/272 (70%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
||||||||| |||| || | ||| || ||||||| |||||||| | || |||
Sbjct 72135 TTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCG 72076
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| || || |||| ||| || ||| || | ||||| |||| ||| | | ||||
Sbjct 72075 GTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTCATGGTCTTGCGACCCTTG 72016
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| | ||||||||| ||||||| ||||||| || | |||||| ||| | ||
Sbjct 72015 CCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGG 71956
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|| || ||| || ||||| | |||| |||| || |||| | |||||||||||||||
Sbjct 71955 CCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATG 71896
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
|||||||| | |||| | |||| ||||||
Sbjct 71895 AAGAGGTCGGGAATCCAGAGGGCGAGGAAAAG 71864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192515217845924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |