Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq298 86.0 5e-12
>seq298
Length=128316
Score = 86.0 bits (94), Expect = 5e-12
Identities = 153/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
|| || | ||| ||||| ||||| || || || ||||| || |||| | |||| ||
Sbjct 44769 AAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGA 44828
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
|| |||| | || || | || |||||| ||||||||||||| || ||| ||||
Sbjct 44829 CCAACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCTCG 44888
Query 30137 GAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195
|| | |||| |||| ||||| |||||||||||||||||| | | ||||||
Sbjct 44889 CTCAGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTCAGCGATGACGGC 44947
Query 30196 CTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30232
| || ||||| | ||| || || |||||||| |||
Sbjct 44948 --GCGAAGGAAGACGCGCTTCGTAGTAAGGAGGGGCAAC 44984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406158022180756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |