Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq439 172 1e-37 seq356 163 6e-35 seq836 143 6e-29 seq694 86.0 1e-11 >seq439 Length=70108 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || |||| || | ||| || || |||||||||||||| | Sbjct 3879 ACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3938 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || |||||||||| || || |||||| || Sbjct 3939 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 3998 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| |||| || || Sbjct 3999 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 4058 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||||||||| | ||||| ||||| |||||||| Sbjct 4059 CTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 4106 >seq356 Length=453554 Score = 163 bits (180), Expect = 6e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||| |||||||| ||||| || ||||| | ||| || || ||||||||||| ||| Sbjct 345821 ACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACT 345762 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| ||||| |||||||| | || || || |||||||| | ||| || ||||| | Sbjct 345761 CAAG-GTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAG 345703 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| ||||||||||| || ||||| | || ||| | || || |||||||||| |||| Sbjct 345702 GAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGA 345643 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || |||||||| || ||||| ||||| ||||| || ||||| Sbjct 345642 CCTCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 345594 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| |||||||| || || || | || || || |||||||||||||||| Sbjct 345593 ACCTCCACGGAGGCGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 345534 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || || || || ||||| || |||| || || ||||| || Sbjct 345533 CAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGG 345474 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || ||| | ||||| ||||| || | |||||| Sbjct 345473 GATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGAC 345414 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || | ||||| ||||| |||||||| Sbjct 345413 CTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 345366 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| || || |||||||||||||| | Sbjct 345081 ACCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 345022 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| || |||| || || |||||| || Sbjct 345021 CAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGG 344962 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||||| || || | ||||| || || || | ||||| Sbjct 344961 AATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGAC 344902 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| || || Sbjct 344901 CTCAAGGGTGATGGTCTTGCCGGT 344878 >seq836 Length=245415 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||| ||||| || || || ||||| |||||| Sbjct 44283 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 44342 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| || || ||||||||||| |||||||| | || || | ||| Sbjct 44343 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 44402 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || || || || ||||||||||||| ||||| ||||| Sbjct 44403 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 44461 >seq694 Length=291004 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/233 (68%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 312486 CGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATCG 312545 || |||||||| | | |||||||| || | ||| | ||||| || || || ||| | Sbjct 233718 CGACCCCACTTCAGGGCCTTGACAATGGAGTTGAAATTATCGTCCATGAGAATGATCGAG 233777 Query 312546 GCTGCTTCCTTTGCAATGTCTGTACC---ACTCCCCATTGCACACCCGACGTCTGCTTCC 312602 | |||||||| |||| || ||||| | | ||||| | | |||||||| || | Sbjct 233778 GACGCTTCCTTGGCAACTTCGGTACCGGCAATACCCATGGAGAAGCCGACGTCGGCCGTC 233837 Query 312603 TTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTGGCCAAGGGCC 312662 || || || || || ||||| | || || || || || |||| || || ||||| Sbjct 233838 TTGAGCGCGGGAGCATCGTTGGTTCCGTCTCCGGTCACAGCAACGATGTCACCCTGGGCC 233897 Query 312663 TTCATGAGCTGAACCAACTTATACTTATCCTCTGGGGATGAACGGGCAAGAAC 312715 || | | ||| ||||| || ||| ||||| ||| || ||||||||||| Sbjct 233898 TTGAGGCGCTTCACCAAGATACGCTTGTCCTCGGGGCTGGAGCGGGCAAGAAC 233950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046725171732084